1SR8

Structural Genomics, 1.9A crystal structure of cobalamin biosynthesis protein (cbiD) from Archaeoglobus fulgidus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1sr8a_	Multi-domain proteins (alpha and beta)	CbiD-like	CbiD-like	CbiD-like	Cobalamin biosynthesis protein CbiD	(Archaeoglobus fulgidus DSM 4304 ) [TaxId: 224325 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	CbiD-like	8027357	4002972	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	CbiD-like	8039736	3001960	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF01888	e1sr8A2	A: a+b two layers	X: Ribosomal protein S5 domain 2-like (From Topology)	H: Ribosomal protein S5 domain 2-like (From Topology)	T: Ribosomal protein S5 domain 2-like	F: PF01888	ECOD (1.6)
A	F_UNCLASSIFIED	e1sr8A1	A: a+b two layers	X: CbiD-like (Pfam 01888) N-terminal domain (From Topology)	H: CbiD-like (Pfam 01888) N-terminal domain (From Topology)	T: CbiD-like (Pfam 01888) N-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)
A	F_UNCLASSIFIED	e1sr8A3	A: a/b three-layered sandwiches	X: Rossmann-like domain in CbiD (From Topology)	H: Rossmann-like domain in CbiD (From Topology)	T: Rossmann-like domain in CbiD	F: F_UNCLASSIFIED	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.1990.10	Alpha Beta	2-Layer Sandwich	CbiD-like	CbiD-like	CATH (4.3.0)
A	3.30.2110.10	Alpha Beta	2-Layer Sandwich	CbiD-like	CbiD-like	CATH (4.3.0)
A	3.40.50.10720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	CbiD-like domains	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01888	CbiD (CbiD)	CbiD	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	cobalamin biosynthesis protein (cbiD)	cobalt-precorrin-5B C1-methyltransferase activity transferase activity, transferring one-carbon groups transferase activity methyltransferase activity catalytic activity	methylation metabolic process cobalamin metabolic process cobalamin biosynthetic process water-soluble vitamin biosynthetic process organonitrogen compound metabolic process tetrapyrrole metabolic process small molecule biosynthetic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process vitamin biosynthetic process vitamin metabolic process organic cyclic compound metabolic process methylation metabolic process cobalamin metabolic process cobalamin biosynthetic process water-soluble vitamin biosynthetic process organonitrogen compound metabolic process tetrapyrrole metabolic process small molecule biosynthetic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process vitamin biosynthetic process vitamin metabolic process organic cyclic compound metabolic process organic substance metabolic process tetrapyrrole biosynthetic process biosynthetic process organic cyclic compound biosynthetic process organic substance biosynthetic process small molecule metabolic process cellular process water-soluble vitamin metabolic process corrin metabolic process corrin biosynthetic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR036074	CbiD superfamily	Homologous Superfamily
A	IPR002748	Cobalt-precorrin-5B C(1)-methyltransferase CbiD	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.