1SQ4 | pdb_00001sq4

Crystal Structure of the Putative Glyoxylate Induced Protein from Pseudomonas aeruginosa, Northeast Structural Genomics Target PaR14

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1sq4b_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	YlbA-like	Glyoxylate-induced protein PA1140	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
A	d1sq4a_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	YlbA-like	Glyoxylate-induced protein PA1140	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	RmlC-like cupins	8041655	3001825	SCOP2B (2022-06-29)
A	SCOP2 Family	AllE-like	8029276	4000965	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	RmlC-like cupins	8041655	3001825	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	DUF3228	e1sq4B2	A: a/b three-layered sandwiches	X: POZ domain	H: POZ domain	T: POZ domain	F: DUF3228	ECOD (v294.1)
A	Cupin_2	e1sq4A2	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: Cupin_2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
A	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF07883	Cupin domain (Cupin_2)	Cupin domain	This family represents the conserved barrel domain of the 'cupin' superfamily [1] ('cupa' is the Latin term for a small barrel).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Glyoxylate-induced Protein	ureidoglycine aminohydrolase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	catabolic process purine nucleobase metabolic process primary metabolic process purine-containing compound catabolic process purine nucleobase catabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process nucleobase catabolic process nucleobase-containing small molecule metabolic process nucleobase metabolic process small molecule metabolic process metabolic process cellular process ureide catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR044704	(S)-ureidoglycine aminohydrolase, N-terminal cupin domain	Domain
A, B	IPR044697	(S)-ureidoglycine aminohydrolase, C-terminal cupin domain	Domain
A, B	IPR011051	RmlC-like cupin domain superfamily	Homologous Superfamily
A, B	IPR017627	(S)-ureidoglycine aminohydrolase	Family
A, B	IPR013096	Cupin 2, conserved barrel	Domain
A, B	IPR014710	RmlC-like jelly roll fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.