1SC5
Sigma-28(FliA)/FlgM complex
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1sc5a1 | All alpha proteins | DNA/RNA-binding 3-helical bundle | Sigma3 and sigma4 domains of RNA polymerase sigma factors | Sigma3 domain | Sigma factor sigma-28 (FliA) | (Aquifex aeolicus ) [TaxId: 63363 ], | SCOPe (2.08) |
A | d1sc5a2 | All alpha proteins | DNA/RNA-binding 3-helical bundle | Sigma3 and sigma4 domains of RNA polymerase sigma factors | Sigma4 domain | Sigma factor sigma-28 (FliA) | (Aquifex aeolicus ) [TaxId: 63363 ], | SCOPe (2.08) |
A | d1sc5a3 | All alpha proteins | Sigma2 domain of RNA polymerase sigma factors | Sigma2 domain of RNA polymerase sigma factors | Sigma2 domain of RNA polymerase sigma factors | Sigma factor sigma-28 (FliA) | (Aquifex aeolicus ) [TaxId: 63363 ], | SCOPe (2.08) |
B | d1sc5b_ | All alpha proteins | Non-globular all-alpha subunits of globular proteins | Anti-sigma factor FlgM | Anti-sigma factor FlgM | Anti-sigma factor FlgM | (Aquifex aeolicus ) [TaxId: 63363 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Sigma factor domain-like | 8040789 | 3000953 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Sigma2 domain of RNA polymerase sigma factors | 8040791 | 3001393 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Sigma factor domain-like | 8040792 | 3000953 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Anti-sigma factor FlgM | 8040794 | 3001384 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF04539 | e1sc5A1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF04539 | ECOD (1.6) |
A | PF04545 | e1sc5A2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF04545 | ECOD (1.6) |
A | PF04542 | e1sc5A3 | A: alpha complex topology | X: Sigma2 domain-like | H: Sigma2 domain of RNA polymerase sigma factors (From Topology) | T: Sigma2 domain of RNA polymerase sigma factors | F: PF04542 | ECOD (1.6) |
B | PF04316 | e1sc5B1 | A: extended segments | X: Anti-sigma factor FlgM (From Topology) | H: Anti-sigma factor FlgM (From Topology) | T: Anti-sigma factor FlgM | F: PF04316 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.1740.10 | Mainly Alpha | Orthogonal Bundle | Rna Polymerase Sigma Factor | Chain: A | CATH (4.3.0) |
A | 1.20.140.160 | Mainly Alpha | Up-down Bundle | Butyryl-CoA Dehydrogenase, subunit A | domain 3 | CATH (4.3.0) |
B | 6.10.140.150 | Special | Helix non-globular | Helix Hairpins | CATH (4.3.0) | |
B | 6.10.140.30 | Special | Helix non-globular | Helix Hairpins | Anti-sigma-28 factor FlgM | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04539 | Sigma-70 region 3 (Sigma70_r3) | Sigma-70 region 3 | - | Family | |
PF04542 | Sigma-70 region 2 (Sigma70_r2) | Sigma-70 region 2 | Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA ... | Domain | |
PF04545 | Sigma-70, region 4 (Sigma70_r4) | Sigma-70, region 4 | Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [1]. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix fami ... | Domain | |
PF04316 | Anti-sigma-28 factor, FlgM (FlgM) | Anti-sigma-28 factor, FlgM | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007627 | RNA polymerase sigma-70 region 2 | Domain | |
IPR000943 | RNA polymerase sigma-70 | Domain | |
IPR012845 | RNA polymerase sigma factor, FliA/WhiG | Family | |
IPR013325 | RNA polymerase sigma factor, region 2 | Homologous Superfamily | |
IPR013324 | RNA polymerase sigma factor, region 3/4-like | Homologous Superfamily | |
IPR014284 | RNA polymerase sigma-70 like domain | Domain | |
IPR007630 | RNA polymerase sigma-70 region 4 | Domain | |
IPR007624 | RNA polymerase sigma-70 region 3 | Domain | |
IPR035890 | Anti-sigma-28 factor FlgM superfamily | Homologous Superfamily | |
IPR031316 | Anti-sigma-28 factor FlgM, C-terminal | Domain |