1S3S
Crystal structure of AAA ATPase p97/VCP ND1 in complex with p47 C
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Cdc48 domain 2-like | 8032514 | 3000725 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8032512 | 3002019 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104156 | 3002834 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | ADC-like | 8032511 | 3001132 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ADC-like | 8032511 | 3001132 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104156 | 3002834 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Cdc48 domain 2-like | 8032514 | 3000725 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8032512 | 3002019 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104156 | 3002834 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Cdc48 domain 2-like | 8032514 | 3000725 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RecA-like P-loop NTPases | 8032512 | 3002019 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | ADC-like | 8032511 | 3001132 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | ADC-like | 8032511 | 3001132 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RecA-like P-loop NTPases | 8032512 | 3002019 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Cdc48 domain 2-like | 8032514 | 3000725 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104156 | 3002834 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104156 | 3002834 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Cdc48 domain 2-like | 8032514 | 3000725 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | ADC-like | 8032511 | 3001132 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | RecA-like P-loop NTPases | 8032512 | 3002019 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Cdc48 domain 2-like | 8032514 | 3000725 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | RecA-like P-loop NTPases | 8032512 | 3002019 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | ADC-like | 8032511 | 3001132 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104156 | 3002834 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Ubiquitin-like | 8033613 | 3000157 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Ubiquitin-like | 8033613 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02359 | e1s3sA8 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
A | PF17862 | e1s3sA7 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
A | PF02933 | e1s3sA6 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
A | PF00004 | e1s3sA5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
B | PF02359 | e1s3sB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
B | PF17862 | e1s3sB4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
B | PF02933 | e1s3sB3 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
B | PF00004 | e1s3sB2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
C | PF02359 | e1s3sC8 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
C | PF17862 | e1s3sC7 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
C | PF02933 | e1s3sC6 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
C | PF00004 | e1s3sC5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
D | PF02359 | e1s3sD8 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
D | PF17862 | e1s3sD7 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
D | PF02933 | e1s3sD6 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
D | PF00004 | e1s3sD5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
E | PF02359 | e1s3sE8 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
E | PF17862 | e1s3sE7 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
E | PF02933 | e1s3sE6 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
E | PF00004 | e1s3sE5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
F | PF02359 | e1s3sF8 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
F | PF17862 | e1s3sF7 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
F | PF02933 | e1s3sF6 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
F | PF00004 | e1s3sF5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
G | PF00789 | e1s3sG1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00789 | ECOD (1.6) |
H | PF00789 | e1s3sH1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00789 | ECOD (1.6) |
I | F_UNCLASSIFIED | e1s3sI2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: F_UNCLASSIFIED | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02933 | Cell division protein 48 (CDC48), domain 2 (CDC48_2) | Cell division protein 48 (CDC48), domain 2 | This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ... | Domain | |
PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain | |
PF02359 | Cell division protein 48 (CDC48), N-terminal domain (CDC48_N) | Cell division protein 48 (CDC48), N-terminal domain | This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ... | Domain | |
PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain | |
PF00789 | UBX domain (UBX) | UBX domain | This domain is present in ubiquitin-regulatory proteins and is a general Cdc48-interacting module [2]. | Domain | |
PF08059 | SEP domain (SEP) | SEP domain | The SEP domain is named after Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47. In p47, the SEP domain has been shown to bind to and inhibit the cysteine protease cathepsin L [1]. Most SEP domains ar ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR003959 | ATPase, AAA-type, core | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR029067 | CDC48 domain 2-like superfamily | Homologous Superfamily | |
IPR005938 | AAA ATPase, CDC48 family | Family | |
IPR003338 | CDC48, N-terminal subdomain | Domain | |
IPR004201 | CDC48, domain 2 | Domain | |
IPR009010 | Aspartate decarboxylase-like domain superfamily | Homologous Superfamily | |
IPR003593 | AAA+ ATPase domain | Domain | |
IPR041569 | AAA ATPase, AAA+ lid domain | Domain | |
IPR003960 | ATPase, AAA-type, conserved site | Conserved Site | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
IPR036241 | NSFL1 cofactor p47, SEP domain superfamily | Homologous Superfamily | |
IPR009060 | UBA-like superfamily | Homologous Superfamily | |
IPR001012 | UBX domain | Domain | |
IPR012989 | SEP domain | Domain |