1S28 | pdb_00001s28

Crystal Structure of AvrPphF ORF1, the Chaperone for the Type III Effector AvrPphF ORF2 from P. syringae

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1s28d1	Alpha and beta proteins (a+b)	Secretion chaperone-like	Type III secretory system chaperone-like	Type III secretory system chaperone	AvrPphF ORF1, chaperone of AvrPphF ORF2	(Pseudomonas savastanoi pv. phaseolicola ) [TaxId: 319 ],	SCOPe (2.08)
D	d1s28d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pseudomonas savastanoi pv. phaseolicola ) [TaxId: 319 ],	SCOPe (2.08)
C	d1s28c1	Alpha and beta proteins (a+b)	Secretion chaperone-like	Type III secretory system chaperone-like	Type III secretory system chaperone	AvrPphF ORF1, chaperone of AvrPphF ORF2	(Pseudomonas savastanoi pv. phaseolicola ) [TaxId: 319 ],	SCOPe (2.08)
C	d1s28c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pseudomonas savastanoi pv. phaseolicola ) [TaxId: 319 ],	SCOPe (2.08)
B	d1s28b1	Alpha and beta proteins (a+b)	Secretion chaperone-like	Type III secretory system chaperone-like	Type III secretory system chaperone	AvrPphF ORF1, chaperone of AvrPphF ORF2	(Pseudomonas savastanoi pv. phaseolicola ) [TaxId: 319 ],	SCOPe (2.08)
B	d1s28b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pseudomonas savastanoi pv. phaseolicola ) [TaxId: 319 ],	SCOPe (2.08)
A	d1s28a1	Alpha and beta proteins (a+b)	Secretion chaperone-like	Type III secretory system chaperone-like	Type III secretory system chaperone	AvrPphF ORF1, chaperone of AvrPphF ORF2	(Pseudomonas savastanoi pv. phaseolicola ) [TaxId: 319 ],	SCOPe (2.08)
A	d1s28a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Pseudomonas savastanoi pv. phaseolicola ) [TaxId: 319 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Type III secretory system chaperone-like	8039094	3000727	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Type III secretory system chaperone-like	8039094	3000727	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Type III secretory system chaperone-like	8039094	3000727	SCOP2B (2022-06-29)
A	SCOP2 Family	Type III secretory system chaperone	8026715	4003372	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Type III secretory system chaperone-like	8039094	3000727	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	CesT	e1s28D1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Type III secretory system chaperone (From Topology)	T: Type III secretory system chaperone	F: CesT	ECOD (1.6)
C	CesT	e1s28C1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Type III secretory system chaperone (From Topology)	T: Type III secretory system chaperone	F: CesT	ECOD (1.6)
B	CesT	e1s28B1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Type III secretory system chaperone (From Topology)	T: Type III secretory system chaperone	F: CesT	ECOD (1.6)
A	CesT	e1s28A1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Type III secretory system chaperone (From Topology)	T: Type III secretory system chaperone	F: CesT	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.30.1460.10	Alpha Beta	2-Layer Sandwich	Yope Regulator	Chain: A,	CATH (4.3.0)
C	3.30.1460.10	Alpha Beta	2-Layer Sandwich	Yope Regulator	Chain: A,	CATH (4.3.0)
B	3.30.1460.10	Alpha Beta	2-Layer Sandwich	Yope Regulator	Chain: A,	CATH (4.3.0)
A	3.30.1460.10	Alpha Beta	2-Layer Sandwich	Yope Regulator	Chain: A,	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	ORF1	-	establishment of protein localization transport secretion protein secretion by the type III secretion system establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport macromolecule localization establishment of protein localization transport secretion protein secretion by the type III secretion system establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport macromolecule localization cellular process intracellular protein localization	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR010261	Tir chaperone protein (CesT) family	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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