1RSC | pdb_00001rsc

STRUCTURE OF AN EFFECTOR INDUCED INACTIVATED STATE OF RIBULOSE BISPHOSPHATE CARBOXYLASE(SLASH)OXYGENASE: THE BINARY COMPLEX BETWEEN ENZYME AND XYLULOSE BISPHOSPHATE

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1rsca1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)
Ad1rsca2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)
C [auth B]d1rscb1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)
C [auth B]d1rscb2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)
G [auth D]d1rscd1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)
G [auth D]d1rscd2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)
I [auth E]d1rsce1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)
I [auth E]d1rsce2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)
K [auth F]d1rscf1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)
K [auth F]d1rscf2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)
M [auth G]d1rscg1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)
M [auth G]d1rscg2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)
O [auth H]d1rsch1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)
O [auth H]d1rsch2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)
E [auth C]d1rscc1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)
E [auth C]d1rscc2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)
B [auth M]d1rscm_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)
D [auth I]d1rsci_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)
F [auth N]d1rscn_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)
H [auth J]d1rscj_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)
J [auth O]d1rsco_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)
L [auth K]d1rsck_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)
N [auth P]d1rscp_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)
P [auth L]d1rscl_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Synechococcus elongatus PCC 6301 ) [TaxId: 269084 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8035453 3001258 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRuBisCo, C-terminal domain 8043701 3000552 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8035453 3001258 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyRuBisCo, C-terminal domain 8043701 3000552 SCOP2B (2022-06-29)
G [auth D]SCOP2B SuperfamilyRuBisCo, C-terminal domain 8043701 3000552 SCOP2B (2022-06-29)
G [auth D]SCOP2B SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8035453 3001258 SCOP2B (2022-06-29)
I [auth E]SCOP2B SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8035453 3001258 SCOP2B (2022-06-29)
I [auth E]SCOP2B SuperfamilyRuBisCo, C-terminal domain 8043701 3000552 SCOP2B (2022-06-29)
K [auth F]SCOP2B SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8035453 3001258 SCOP2B (2022-06-29)
K [auth F]SCOP2B SuperfamilyRuBisCo, C-terminal domain 8043701 3000552 SCOP2B (2022-06-29)
M [auth G]SCOP2B SuperfamilyRuBisCo, C-terminal domain 8043701 3000552 SCOP2B (2022-06-29)
M [auth G]SCOP2B SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8035453 3001258 SCOP2B (2022-06-29)
O [auth H]SCOP2B SuperfamilyRuBisCo, C-terminal domain 8043701 3000552 SCOP2B (2022-06-29)
O [auth H]SCOP2B SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8035453 3001258 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyRuBisCo, C-terminal domain 8043701 3000552 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8035453 3001258 SCOP2B (2022-06-29)
B [auth M]SCOP2 FamilyRuBisCO, small subunit 8023481 4001455 SCOP2 (2022-06-29)
B [auth M]SCOP2 SuperfamilyRuBisCO, small subunit 8035861 3001622 SCOP2 (2022-06-29)
D [auth I]SCOP2B SuperfamilyRuBisCO, small subunit 8035861 3001622 SCOP2B (2022-06-29)
F [auth N]SCOP2B SuperfamilyRuBisCO, small subunit 8035861 3001622 SCOP2B (2022-06-29)
H [auth J]SCOP2B SuperfamilyRuBisCO, small subunit 8035861 3001622 SCOP2B (2022-06-29)
J [auth O]SCOP2B SuperfamilyRuBisCO, small subunit 8035861 3001622 SCOP2B (2022-06-29)
L [auth K]SCOP2B SuperfamilyRuBisCO, small subunit 8035861 3001622 SCOP2B (2022-06-29)
N [auth P]SCOP2B SuperfamilyRuBisCO, small subunit 8035861 3001622 SCOP2B (2022-06-29)
P [auth L]SCOP2B SuperfamilyRuBisCO, small subunit 8035861 3001622 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARuBisCO_large_Ne1rscA1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
ARuBisCO_largee1rscA2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
C [auth B]RuBisCO_large_Ne1rscB1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
C [auth B]RuBisCO_largee1rscB2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
G [auth D]RuBisCO_large_Ne1rscD1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
G [auth D]RuBisCO_largee1rscD2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
I [auth E]RuBisCO_large_Ne1rscE1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
I [auth E]RuBisCO_largee1rscE2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
K [auth F]RuBisCO_large_Ne1rscF1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
K [auth F]RuBisCO_largee1rscF2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
M [auth G]RuBisCO_large_Ne1rscG1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
M [auth G]RuBisCO_largee1rscG2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
O [auth H]RuBisCO_large_Ne1rscH1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
O [auth H]RuBisCO_largee1rscH2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
E [auth C]RuBisCO_large_Ne1rscC1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
E [auth C]RuBisCO_largee1rscC2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
B [auth M]RuBisCO_smalle1rscM1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
D [auth I]RuBisCO_smalle1rscI1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
F [auth N]RuBisCO_smalle1rscN1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
H [auth J]RuBisCO_smalle1rscJ1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
J [auth O]RuBisCO_smalle1rscO1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
L [auth K]RuBisCO_smalle1rscK1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
N [auth P]RuBisCO_smalle1rscP1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
P [auth L]RuBisCO_smalle1rscL1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
A3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
C [auth B]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
C [auth B]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
G [auth D]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
G [auth D]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
I [auth E]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
I [auth E]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
K [auth F]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
K [auth F]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
M [auth G]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
M [auth G]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
O [auth H]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
O [auth H]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
E [auth C]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
E [auth C]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
B [auth M]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
D [auth I]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
F [auth N]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
H [auth J]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
J [auth O]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
L [auth K]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
N [auth P]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
P [auth L]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (LARGE CHAIN)
RIBULOSE 1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE (SMALL CHAIN)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR020888Ribulose bisphosphate carboxylase large subunit, type IFamily
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilyHomologous Superfamily
IPR020878Ribulose bisphosphate carboxylase, large chain, active siteActive Site
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalDomain
IPR033966RuBisCOFamily
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalDomain
IPR036422RuBisCO large subunit, N-terminal domain superfamilyHomologous Superfamily
IPR036385Ribulose bisphosphate carboxylase, small subunit superfamilyHomologous Superfamily
IPR024681Ribulose bisphosphate carboxylase, small subunitFamily
IPR000894Ribulose bisphosphate carboxylase small subunit, domainDomain