1RMD
RAG1 DIMERIZATION DOMAIN
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1rmda1 | Small proteins | beta-beta-alpha zinc fingers | beta-beta-alpha zinc fingers | Classic zinc finger, C2H2 | V(D)J recombination activating protein 1 (RAG1), dimerization domain | house mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
A | d1rmda2 | Small proteins | RING/U-box | RING/U-box | RING finger domain, C3HC4 | V(D)J recombination activating protein 1 (RAG1), dimerization domain | house mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | RING finger domain C3HC4 | 8026908 | 4000374 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Classic zinc finger C2H2 | 8026535 | 4003583 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | RING/U-box like | 8039287 | 3000160 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | beta-beta-alpha zinc fingers | 8038914 | 3001077 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00097,PF12560 | e1rmdA1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: PF00097,PF12560 | ECOD (1.6) |
A | PF10426 | e1rmdA2 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: PF10426 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
A | 3.30.160.60 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | Classic Zinc Finger | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12560 | RAG1 importin binding (RAG1_imp_bd) | RAG1 importin binding | - | Family | |
PF00097 | Zinc finger, C3HC4 type (RING finger) (zf-C3HC4) | Zinc finger, C3HC4 type (RING finger) | The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid [1]. Many protein ... | Domain | |
PF10426 | Recombination-activating protein 1 zinc-finger domain (zf-RAG1) | Recombination-activating protein 1 zinc-finger domain | This is a C2-H2 zinc-finger domain closely resembling the classical TFIIIA-type zinc-finger, CX3FX5LX2-3H, despite having a valine and a tyrosine at the core instead of a phenylalanine and a leucine, hence CX3VX1LX2YX2H. The structure, nevertheless, ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR024627 | V(D)J recombination-activating protein 1 | Family | |
IPR019485 | V(D)J recombination-activating protein 1, Zinc finger | Domain | |
IPR036236 | Zinc finger C2H2 superfamily | Homologous Superfamily | |
IPR023336 | RAG nonamer-binding domain | Domain | |
IPR018957 | Zinc finger, C3HC4 RING-type | Domain | |
IPR017907 | Zinc finger, RING-type, conserved site | Conserved Site | |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily | |
IPR035714 | RAG1 importin-binding | Domain | |
IPR001841 | Zinc finger, RING-type | Domain |