1RGO

Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B [auth A]	d1rgoa1	Small proteins	CCCH zinc finger	CCCH zinc finger	CCCH zinc finger	Butyrate response factor 2 (Tis11D)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth A]	SCOP2 Family	CCCH zinc finger	8028231	4003893	SCOP2 (2022-06-29)
B [auth A]	SCOP2 Family	CCCH zinc finger	8028234	4003893	SCOP2 (2022-06-29)
B [auth A]	SCOP2 Superfamily	CCCH zinc finger-like	8040610	3001741	SCOP2 (2022-06-29)
B [auth A]	SCOP2 Superfamily	CCCH zinc finger-like	8040613	3001741	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth A]	PF00642	e1rgoA1	A: few secondary structure elements	X: CCCH zinc finger	H: CCCH zinc finger (From Topology)	T: CCCH zinc finger	F: PF00642	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth A]	PF00642	Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH)	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth D]	RNA (5'-R(UPUPAPUPUPUPAPUP*U)-3')	-	-	-
B [auth A]	Butyrate response factor 2	mRNA 3'-UTR binding RNA binding mRNA 3'-UTR AU-rich region binding binding organic cyclic compound binding nucleic acid binding mRNA binding cation binding ion binding metal ion binding small molecule binding	developmental process fat cell differentiation regulation of biological process regulation of cellular process regulation of developmental process cellular developmental process negative regulation of developmental process biological regulation negative regulation of biological process regulation of cell differentiation negative regulation of fat cell differentiation cell differentiation negative regulation of cellular process negative regulation of cell differentiation developmental process fat cell differentiation regulation of biological process regulation of cellular process regulation of developmental process cellular developmental process negative regulation of developmental process biological regulation negative regulation of biological process regulation of cell differentiation negative regulation of fat cell differentiation cell differentiation negative regulation of cellular process negative regulation of cell differentiation cellular process regulation of fat cell differentiation negative regulation of cellular metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process organic substance biosynthetic process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process mRNA catabolic process cellular metabolic process negative regulation of metabolic process primary metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process nucleobase-containing compound catabolic process organic cyclic compound metabolic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of macromolecule biosynthetic process nucleic acid catabolic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process catabolic process cellular biosynthetic process RNA metabolic process macromolecule catabolic process regulation of mRNA catabolic process organic substance metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of macromolecule metabolic process regulation of catabolic process gene expression mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound catabolic process regulation of mRNA stability regulation of cellular biosynthetic process negative regulation of biosynthetic process regulation of RNA stability regulation of mRNA metabolic process organic substance catabolic process cellular response to endogenous stimulus cellular response to growth factor stimulus response to stimulus response to transforming growth factor beta cellular response to transforming growth factor beta stimulus response to endogenous stimulus response to growth factor negative regulation of stem cell differentiation stem cell differentiation regulation of stem cell differentiation cellular response to stimulus signaling intracellular signal transduction cell communication intracellular signaling cassette MAPK cascade ERK1 and ERK2 cascade signal transduction positive regulation of metabolic process positive regulation of macromolecule metabolic process positive regulation of nucleobase-containing compound metabolic process positive regulation of mRNA metabolic process positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay positive regulation of RNA metabolic process nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay positive regulation of biological process mRNA destabilization regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay RNA destabilization nuclear-transcribed mRNA catabolic process positive regulation of catabolic process positive regulation of mRNA catabolic process organonitrogen compound biosynthetic process protein metabolic process organonitrogen compound metabolic process regulation of protein metabolic process translation regulation of translation 3'-UTR-mediated mRNA destabilization hemopoiesis anatomical structure development cell development response to fibroblast growth factor cellular response to fibroblast growth factor stimulus regulation of leukocyte differentiation multicellular organismal process regulation of leukocyte activation regulation of cell activation mononuclear cell differentiation lymphocyte differentiation lymphocyte activation regulation of cell development leukocyte activation regulation of B cell differentiation multicellular organism development B cell differentiation regulation of B cell activation regulation of immune system process regulation of multicellular organismal process regulation of lymphocyte differentiation regulation of multicellular organismal development B cell activation cell activation immune system process regulation of hemopoiesis leukocyte differentiation regulation of lymphocyte activation T cell differentiation in thymus T cell activation T cell differentiation response to organic substance response to granulocyte macrophage colony-stimulating factor response to cytokine cellular response to granulocyte macrophage colony-stimulating factor stimulus cellular response to chemical stimulus response to chemical cellular response to cytokine stimulus cellular response to organic substance cellular response to tumor necrosis factor response to tumor necrosis factor negative regulation of mitotic cell cycle phase transition regulation of cell cycle phase transition regulation of cell cycle process negative regulation of cell cycle cell cycle phase transition negative regulation of cell cycle process mitotic cell cycle negative regulation of mitotic cell cycle regulation of mitotic cell cycle phase transition regulation of mitotic cell cycle mitotic cell cycle process negative regulation of cell cycle phase transition cell cycle regulation of cell cycle mitotic cell cycle phase transition cell cycle process response to stress response to wounding somatic stem cell population maintenance maintenance of cell number stem cell population maintenance definitive hemopoiesis somatic stem cell division stem cell division cell division cellular response to epidermal growth factor stimulus response to epidermal growth factor response to lipid response to glucocorticoid cellular response to organic cyclic compound cellular response to glucocorticoid stimulus cellular response to corticosteroid stimulus response to corticosteroid response to hormone response to steroid hormone cellular response to lipid cellular response to steroid hormone stimulus response to organic cyclic compound cellular response to hormone stimulus	intracellular anatomical structure cytoplasm cellular anatomical entity protein-containing complex ribonucleoprotein complex membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth A]	IPR007635	Tis11B-like protein, N-terminal	Domain
B [auth A]	IPR036855	Zinc finger, CCCH-type superfamily	Homologous Superfamily
B [auth A]	IPR045877	RNA-binding protein ZFP36-like	Family
B [auth A]	IPR000571	Zinc finger, CCCH-type	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B [auth A]	Pharos: P47974	colorectal cancer prostate cancer Precursor T-Cell Lymphoblastic Leukemia-Lymphoma facioscapulohumeral muscular dystrophy invasive ductal breast carcinoma limb-girdle muscular dystrophy lymphoplasmacytic lymphoma adenoma malignant pancreatic neoplasm astrocytic tumor myopathy Becker muscular dystrophy ovarian cancer pilocytic astrocytoma cleft lip colorectal cancer prostate cancer Precursor T-Cell Lymphoblastic Leukemia-Lymphoma facioscapulohumeral muscular dystrophy invasive ductal breast carcinoma limb-girdle muscular dystrophy lymphoplasmacytic lymphoma adenoma malignant pancreatic neoplasm astrocytic tumor myopathy Becker muscular dystrophy ovarian cancer pilocytic astrocytoma cleft lip primitive neuroectodermal tumor psoriasis Down syndrome subependymal giant cell astrocytoma Emery-Dreifuss muscular dystrophy gastric carcinoma juvenile dermatomyositis lung cancer malignant ependymoma adrenal cortex carcinoma medulloblastoma atypical teratoid rhabdoid tumor oligodendroglioma pancreatic ductal adenocarcinoma breast cancer pituitary cancer Crohn disease rheumatoid arthritis Duchenne muscular dystrophy esophageal adenocarcinoma glioblastoma large cell medulloblastoma lung carcinoma malignant glioma amyotrophic lateral sclerosis myocardial infarction B-cell chronic lymphocytic leukemia osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia chronic obstructive pulmonary disease colorectal carcinoma cystic fibrosis sinusitis ductal breast carcinoma in situ

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.