1R9D | pdb_00001r9d

Glycerol bound form of the B12-independent glycerol dehydratase from Clostridium butyricum

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1r9db_	Alpha and beta proteins (a/b)	PFL-like glycyl radical enzymes	PFL-like glycyl radical enzymes	PFL-like	Glycerol dehydratase DhaB1	(Clostridium butyricum ) [TaxId: 1492 ],	SCOPe (2.08)
A	d1r9da_	Alpha and beta proteins (a/b)	PFL-like glycyl radical enzymes	PFL-like glycyl radical enzymes	PFL-like	Glycerol dehydratase DhaB1	(Clostridium butyricum ) [TaxId: 1492 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	PFL-like glycyl radical enzymes	8038803	3001069	SCOP2B (2022-06-29)
A	SCOP2 Family	PFL-like	8026424	4003576	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PFL-like glycyl radical enzymes	8038803	3001069	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	VRR_NUC	e1r9dB1	A: alpha bundles	X: P-loop domains-like	H: Hemagglutinin HA2 chain	T: Hemagglutinin HA2 chain	F: VRR_NUC	ECOD (develop294)
A	Aconitase	e1r9dA1	A: alpha bundles	X: Aconitase iron-sulfur domain	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain II	F: Aconitase	ECOD (develop294)
A		e1r9dA2	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F:	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.20.70.20	Alpha Beta	Alpha-Beta Barrel	Anaerobic Ribonucleotide-triphosphate Reductase Large Chain		CATH (4.3.0)
A	3.20.70.20	Alpha Beta	Alpha-Beta Barrel	Anaerobic Ribonucleotide-triphosphate Reductase Large Chain		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	glycerol dehydratase	lyase activity catalytic activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR051215	Glycyl Radical Enzyme	Family
A, B	IPR004184	Pyruvate formate lyase domain	Domain
A, B	IPR001150	Glycine radical domain	Domain
A, B	IPR019777	Formate C-acetyltransferase glycine radical, conserved site	Conserved Site
A, B	IPR010098	Glycyl radical enzyme, PFL2/glycerol dehydratase family	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.