1R6Z
The Crystal Structure of the Argonaute2 PAZ domain (as a MBP fusion)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth P] | SCOP2B Superfamily | PAZ domain | 8041535 | 3001750 | SCOP2B (2022-06-29) |
A [auth P] | SCOP2B Superfamily | Type 2 solute binding protein-like | 8058187 | 3000083 | SCOP2B (2022-06-29) |
C [auth Z] | SCOP2B Superfamily | Type 2 solute binding protein-like | 8058187 | 3000083 | SCOP2B (2022-06-29) |
C [auth Z] | SCOP2B Superfamily | PAZ domain | 8041535 | 3001750 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | PAZ domain | 8041535 | 3001750 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | Type 2 solute binding protein-like | 8058187 | 3000083 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth P] | PAZ | e1r6zP1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PAZ | ECOD (1.6) |
A [auth P] | SBP_bac_1_C | e1r6zP2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_C | ECOD (1.6) |
A [auth P] | SBP_bac_1_N_1 | e1r6zP3 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_N_1 | ECOD (1.6) |
C [auth Z] | PAZ | e1r6zZ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PAZ | ECOD (1.6) |
C [auth Z] | SBP_bac_1_C | e1r6zZ3 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_C | ECOD (1.6) |
C [auth Z] | SBP_bac_1_N_1 | e1r6zZ2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_N_1 | ECOD (1.6) |
B [auth A] | PAZ | e1r6zA1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PAZ | ECOD (1.6) |
B [auth A] | SBP_bac_1_C | e1r6zA3 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_C | ECOD (1.6) |
B [auth A] | SBP_bac_1_N_1 | e1r6zA2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_1_N_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth P] | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (4.3.0) |
A [auth P] | 2.170.260.10 | Mainly Beta | Beta Complex | paz domain | paz domain | CATH (4.3.0) |
C [auth Z] | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (4.3.0) |
C [auth Z] | 2.170.260.10 | Mainly Beta | Beta Complex | paz domain | paz domain | CATH (4.3.0) |
B [auth A] | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (4.3.0) |
B [auth A] | 2.170.260.10 | Mainly Beta | Beta Complex | paz domain | paz domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth P], B [auth A], C [auth Z] | PF01547 | Bacterial extracellular solute-binding protein (SBP_bac_1) | Bacterial extracellular solute-binding protein | - | Family |
A [auth P], B [auth A], C [auth Z] | PF02170 | PAZ domain (PAZ) | PAZ domain | This domain is named PAZ after the proteins Piwi Argonaut and Zwille. This domain is found in two families of proteins that are involved in post-transcriptional gene silencing. These are the Piwi family and the Dicer family, that includes the Carpel ... | Domain |
A [auth P], B [auth A], C [auth Z] | PF08699 | Argonaute linker 1 domain (ArgoL1) | Argonaute linker 1 domain | ArgoL1 is a region found in argonaute [1] proteins. It normally co-occurs with Pfam:PF02179 and Pfam:PF02171. It is a linker region between the N-terminal and the PAZ domains. It contains an alpha-helix packed against a three-stranded antiparallel be ... | Domain |