1R17 | pdb_00001r17

Crystal Structure Analysis of S.epidermidis adhesin SdrG binding to Fibrinogen (adhesin-ligand complex)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1r17b1	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Bacterial adhesins	Fibrinogen-binding domain	Fibrinogen-binding adhesin SdrG	(Staphylococcus epidermidis ) [TaxId: 1282 ],	SCOPe (2.08)
A	d1r17a1	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Bacterial adhesins	Fibrinogen-binding domain	Fibrinogen-binding adhesin SdrG	(Staphylococcus epidermidis ) [TaxId: 1282 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Bacterial adhesin-like	8040205	3000723	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Bacterial adhesin-like	8040204	3000723	SCOP2B (2022-06-29)
A	SCOP2 Family	Fibrinogen-binding domain	8027825	4003881	SCOP2 (2022-06-29)
A	SCOP2 Family	Fibrinogen-binding domain	8027826	4003881	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Bacterial adhesin-like	8040204	3000723	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Bacterial adhesin-like	8040205	3000723	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	SdrG_C_C	e1r17B2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: SdrG_C_C	ECOD (1.6)
B	EUF07751	e1r17B1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: EUF07751	ECOD (1.6)
A	SdrG_C_C	e1r17A2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: SdrG_C_C	ECOD (1.6)
A	EUF07751	e1r17A1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: EUF07751	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.40.1280	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
B	2.60.40.1290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
A	2.60.40.1280	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
A	2.60.40.1290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	fibrinopeptide B	-	-	-
A, B	fibrinogen-binding protein SdrG	cation binding ion binding binding metal ion binding small molecule binding	cell adhesion cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR033764	SD-repeat containing protein, B domain	Domain
A, B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B	IPR005877	YSIRK Gram-positive signal peptide	Domain
A, B	IPR008966	Adhesion domain superfamily	Homologous Superfamily
A, B	IPR011252	Fibrogen-binding domain 1	Homologous Superfamily
A, B	IPR011266	Fibrinogen-binding domain 2	Domain
A, B	IPR019931	LPXTG cell wall anchor motif	Conserved Site
A, B	IPR041171	SDR-like Ig domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.