1QL3 | pdb_00001ql3

Structure of the soluble domain of cytochrome c552 from Paracoccus denitrificans in the reduced state

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1ql3d_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Paracoccus denitrificans ) [TaxId: 266 ],	SCOPe (2.08)
C	d1ql3c_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Paracoccus denitrificans ) [TaxId: 266 ],	SCOPe (2.08)
B	d1ql3b_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Paracoccus denitrificans ) [TaxId: 266 ],	SCOPe (2.08)
A	d1ql3a_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Paracoccus denitrificans ) [TaxId: 266 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Cytochrome c	8036403	3000815	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cytochrome c	8036403	3000815	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cytochrome c	8036403	3000815	SCOP2B (2022-06-29)
A	SCOP2 Family	Monodomain cytochrome c	8024024	4000635	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cytochrome c	8036403	3000815	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	MgsA_C	e1ql3D1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: MgsA_C	ECOD (v294.1)
C	MgsA_C	e1ql3C1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: MgsA_C	ECOD (v294.1)
B	MgsA_C	e1ql3B1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F: MgsA_C	ECOD (v294.1)
A	Cytochrom_C	e1ql3A1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c	T: Cytochrome c	F: Cytochrom_C	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
C	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
B	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
A	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	CYTOCHROME C552	binding tetrapyrrole binding heme binding electron transfer activity cation binding ion binding metal ion binding small molecule binding	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036909	Cytochrome c-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR009056	Cytochrome c-like domain	Domain
A, B, C, D	IPR002327	Cytochrome c, class IA/ IB	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.