1QD7 | pdb_00001qd7

PARTIAL MODEL FOR 30S RIBOSOMAL SUBUNIT

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
I	d1qd7i_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Small subunit	Prokaryotic (30S subunit)	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
H	d1qd7h_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Small subunit	Prokaryotic (30S subunit)	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
G	d1qd7g_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Small subunit	Prokaryotic (30S subunit)	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
F	d1qd7f_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Small subunit	Prokaryotic (30S subunit)	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
E	d1qd7e_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Small subunit	Prokaryotic (30S subunit)	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
D	d1qd7d_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Small subunit	Prokaryotic (30S subunit)	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
C	d1qd7c1	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Small subunit	Prokaryotic (30S subunit)	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
C	d1qd7c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)
J	d1qd7j_	Low resolution protein structures	Ribosome and ribosomal fragments	Ribosome and ribosomal fragments	Small subunit	Prokaryotic (30S subunit)	(Thermus thermophilus ) [TaxId: 274 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I	SCOP2B Superfamily	Nucleic acid-binding proteins	8041956	3000135	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	S15/NS1 RNA-binding domain	8036747	3001284	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ribosomal protein S7	8033523	3000799	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ribosomal protein S5 domain 2-like	8034422	3000100	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	dsRNA-binding domain-like	8035098	3000985	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Alpha-L RNA-binding motif	8035740	3001473	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I	Cellulase	e1qd7I1	A: alpha arrays	X: HAD domain-like	H: HAD domain-related	T: PIN domain-like	F: Cellulase	ECOD (v295)
H	PTN_MK_N	e1qd7H1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c	T: Cytochrome c	F: PTN_MK_N	ECOD (v295)
G	PTN_MK_N	e1qd7G1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c	T: Cytochrome c	F: PTN_MK_N	ECOD (v295)
F	PTN_MK_N	e1qd7F1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c	T: Cytochrome c	F: PTN_MK_N	ECOD (v295)
E	PTN_MK_N	e1qd7E1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c	T: Cytochrome c	F: PTN_MK_N	ECOD (v295)
D	PTN_MK_N	e1qd7D1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c	T: Cytochrome c	F: PTN_MK_N	ECOD (v295)
C	FlaF_Ig-like	e1qd7C1	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: FlaF_Ig-like	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
G	PF00410	Ribosomal protein S8 (Ribosomal_S8)	Ribosomal protein S8		Domain
F	PF00177	Ribosomal protein S7p/S5e (Ribosomal_S7)	Ribosomal protein S7p/S5e	This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.	Domain
E	PF01250	Ribosomal protein S6 (Ribosomal_S6)	Ribosomal protein S6		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I	S17 RIBOSOMAL PROTEIN	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
H	S15 RIBOSOMAL PROTEIN	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
G	S8 RIBOSOMAL PROTEIN	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
F	S7 RIBOSOMAL PROTEIN	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
E	S6 RIBOSOMAL PROTEIN	RNA binding small ribosomal subunit rRNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
D	S5 RIBOSOMAL PROTEIN	RNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis response to stimulus response to chemical response to antibiotic biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis response to stimulus response to chemical response to antibiotic biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytoplasm
C	S4 RIBOSOMAL PROTEIN	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	response to stimulus response to chemical response to antibiotic cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process response to stimulus response to chemical response to antibiotic cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
B	END FRAGMENT OF 16 S RNA	-	-	-
J	S20 RIBOSOMAL PROTEIN	-	-	-
A	CENTRAL FRAGMENT OF 16 S RNA	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I	IPR019984	Small ribosomal subunit protein uS17, bacteria/chloroplast	Family
I	IPR019979	Small ribosomal subunit protein uS17, conserved site	Conserved Site
I	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
I	IPR000266	Small ribosomal subunit protein uS17	Family
H	IPR005290	Small ribosomal subunit protein uS15, bacteria	Family
H	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily
H	IPR000589	Small ribosomal subunit protein uS15	Family
G	IPR000630	Small ribosomal subunit protein uS8	Family
G	IPR047863	Small ribosomal subunit protein uS8, conserved site	Conserved Site
G	IPR035987	Small ribosomal subunit protein uS8 superfamily	Homologous Superfamily
F	IPR020606	Small ribosomal subunit protein uS7, conserved site	Conserved Site
F	IPR000235	Small ribosomal subunit protein uS7	Family
F	IPR005717	Small ribosomal subunit protein uS7, bacteria/organella	Family
F	IPR036823	Small ribosomal subunit protein uS7 domain superfamily	Homologous Superfamily
F	IPR023798	Small ribosomal subunit protein uS7 domain	Domain
E	IPR020815	Small ribosomal subunit protein bS6, conserved site	Conserved Site
E	IPR000529	Small ribosomal subunit protein bS6	Family
E	IPR020814	Small ribosomal subunit protein bS6, plastid/chloroplast	Family
E	IPR035980	Small ribosomal subunit protein bS6 superfamily	Homologous Superfamily
E	IPR014717	Translation elongation factor EF1B/small ribosomal subunit protein bS6	Homologous Superfamily
D	IPR000851	Small ribosomal subunit protein uS5	Family
D	IPR005324	Small ribosomal subunit protein uS5, C-terminal	Domain
D	IPR005712	Small ribosomal subunit protein uS5, bacteria	Family
D	IPR013810	Small ribosomal subunit protein uS5, N-terminal	Domain
D	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
D	IPR018192	Small ribosomal subunit protein uS5, N-terminal, conserved site	Conserved Site
D	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
C	IPR018079	Small ribosomal subunit protein uS4, conserved site	Conserved Site
C	IPR002942	RNA-binding S4 domain	Domain
C	IPR001912	Small ribosomal subunit protein uS4, N-terminal	Domain
C	IPR036986	RNA-binding S4 domain superfamily	Homologous Superfamily
C	IPR022801	Small ribosomal subunit protein uS4	Family
C	IPR005709	Small ribosomal subunit protein uS4, bacteria	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.