1Q3R

Crystal structure of the chaperonin from Thermococcus strain KS-1 (nucleotide-free form of single mutant)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1q3ra1	All alpha proteins	GroEL equatorial domain-like	GroEL equatorial domain-like	Group II chaperonin (CCT, TRIC), ATPase domain	Thermosome, E domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)
A	d1q3ra2	Alpha and beta proteins (a/b)	The 'swivelling' beta/beta/alpha domain	GroEL apical domain-like	Group II chaperonin (CCT, TRIC), apical domain	Thermosome, A-domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)
A	d1q3ra3	Alpha and beta proteins (a+b)	GroEL-intermediate domain like	GroEL-intermediate domain like	Group II chaperonin (CCT, TRIC), intermediate domain	Thermosome, I domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)
B	d1q3rb1	All alpha proteins	GroEL equatorial domain-like	GroEL equatorial domain-like	Group II chaperonin (CCT, TRIC), ATPase domain	Thermosome, E domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)
B	d1q3rb2	Alpha and beta proteins (a/b)	The 'swivelling' beta/beta/alpha domain	GroEL apical domain-like	Group II chaperonin (CCT, TRIC), apical domain	Thermosome, A-domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)
B	d1q3rb3	Alpha and beta proteins (a+b)	GroEL-intermediate domain like	GroEL-intermediate domain like	Group II chaperonin (CCT, TRIC), intermediate domain	Thermosome, I domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)
C	d1q3rc1	All alpha proteins	GroEL equatorial domain-like	GroEL equatorial domain-like	Group II chaperonin (CCT, TRIC), ATPase domain	Thermosome, E domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)
C	d1q3rc2	Alpha and beta proteins (a/b)	The 'swivelling' beta/beta/alpha domain	GroEL apical domain-like	Group II chaperonin (CCT, TRIC), apical domain	Thermosome, A-domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)
C	d1q3rc3	Alpha and beta proteins (a+b)	GroEL-intermediate domain like	GroEL-intermediate domain like	Group II chaperonin (CCT, TRIC), intermediate domain	Thermosome, I domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)
D	d1q3rd1	All alpha proteins	GroEL equatorial domain-like	GroEL equatorial domain-like	Group II chaperonin (CCT, TRIC), ATPase domain	Thermosome, E domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)
D	d1q3rd2	Alpha and beta proteins (a/b)	The 'swivelling' beta/beta/alpha domain	GroEL apical domain-like	Group II chaperonin (CCT, TRIC), apical domain	Thermosome, A-domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)
D	d1q3rd3	Alpha and beta proteins (a+b)	GroEL-intermediate domain like	GroEL-intermediate domain like	Group II chaperonin (CCT, TRIC), intermediate domain	Thermosome, I domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	GroEL apical domain-like	8039624	3000963	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GroEL-intermediate domain like	8039627	3001087	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GroEL equatorial domain-like	8039621	3001651	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GroEL-intermediate domain like	8039627	3001087	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GroEL equatorial domain-like	8039621	3001651	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00118	e1q3rA1	A: alpha bundles	X: GroEL equatorial domain-like (From Topology)	H: GroEL equatorial domain-like (From Topology)	T: GroEL equatorial domain-like	F: PF00118	ECOD (1.6)
A	PF00118	e1q3rA3	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: PF00118	ECOD (1.6)
A	PF00118	e1q3rA2	A: mixed a+b and a/b	X: Zincin-like	H: GroEL-intermediate domain like (From Topology)	T: GroEL-intermediate domain like	F: PF00118	ECOD (1.6)
B	PF00118	e1q3rB1	A: alpha bundles	X: GroEL equatorial domain-like (From Topology)	H: GroEL equatorial domain-like (From Topology)	T: GroEL equatorial domain-like	F: PF00118	ECOD (1.6)
B	PF00118	e1q3rB3	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: PF00118	ECOD (1.6)
B	PF00118	e1q3rB2	A: mixed a+b and a/b	X: Zincin-like	H: GroEL-intermediate domain like (From Topology)	T: GroEL-intermediate domain like	F: PF00118	ECOD (1.6)
C	PF00118	e1q3rC1	A: alpha bundles	X: GroEL equatorial domain-like (From Topology)	H: GroEL equatorial domain-like (From Topology)	T: GroEL equatorial domain-like	F: PF00118	ECOD (1.6)
C	PF00118	e1q3rC3	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: PF00118	ECOD (1.6)
C	PF00118	e1q3rC2	A: mixed a+b and a/b	X: Zincin-like	H: GroEL-intermediate domain like (From Topology)	T: GroEL-intermediate domain like	F: PF00118	ECOD (1.6)
D	PF00118	e1q3rD1	A: alpha bundles	X: GroEL equatorial domain-like (From Topology)	H: GroEL equatorial domain-like (From Topology)	T: GroEL equatorial domain-like	F: PF00118	ECOD (1.6)
D	PF00118	e1q3rD3	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: PF00118	ECOD (1.6)
D	PF00118	e1q3rD2	A: mixed a+b and a/b	X: Zincin-like	H: GroEL-intermediate domain like (From Topology)	T: GroEL-intermediate domain like	F: PF00118	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
A	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
A	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)
B	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
B	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
B	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)
C	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
C	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
C	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)
D	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
D	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
D	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00118	TCP-1/cpn60 chaperonin family (Cpn60_TCP1)	TCP-1/cpn60 chaperonin family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Thermosome alpha subunit	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity unfolded protein binding protein binding ATP-dependent protein folding chaperone protein folding chaperone	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR027413	GroEL-like equatorial domain superfamily	Homologous Superfamily
A, B, C, D	IPR017998	Chaperone tailless complex polypeptide 1 (TCP-1)	Family
A, B, C, D	IPR027410	TCP-1-like chaperonin intermediate domain superfamily	Homologous Superfamily
A, B, C, D	IPR002194	Chaperonin TCP-1, conserved site	Conserved Site
A, B, C, D	IPR027409	GroEL-like apical domain superfamily	Homologous Superfamily
A, B, C, D	IPR012714	Thermosome, archaeal	Family
A, B, C, D	IPR002423	Chaperonin Cpn60/GroEL/TCP-1 family	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.