1PS1 | pdb_00001ps1

PENTALENENE SYNTHASE


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyAristolochene/pentalenene synthase 8026488 4001461 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyTerpenoid synthases 8038867 3001615 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyTerpenoid synthases 8038867 3001615 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ATerpene_synth_Ce1ps1A1 A: alpha bundlesX: Terpenoid synthases (From Topology)H: Terpenoid synthases (From Topology)T: Terpenoid synthasesF: Terpene_synth_CECOD (1.6)
BTerpene_synth_Ce1ps1B1 A: alpha bundlesX: Terpenoid synthases (From Topology)H: Terpenoid synthases (From Topology)T: Terpenoid synthasesF: Terpene_synth_CECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.10.600.10 Mainly Alpha Orthogonal Bundle Farnesyl Diphosphate Synthase Farnesyl Diphosphate SynthaseCATH (4.2.0)
B1.10.600.10 Mainly Alpha Orthogonal Bundle Farnesyl Diphosphate Synthase Farnesyl Diphosphate SynthaseCATH (4.2.0)

InterPro: Protein Family Classification InterPro Database Homepage

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
pentalenene synthase  M-CSA #89

Pentalenene synthase is structurally related to farnesyl diphosphate synthase, in accordance with the hypothesis that successive enzymes on a biosynthetic pathway are often evolutionarily related. Pentalene is a sesquiterpene that is a precursor for the pentalenolactone family of antibiotics. The sequiterpene family of secondary metabolites is a very large one, being secreted by plants, fungi and some microorganisms.

Defined by 13 residues: PHE:A-76PHE:A-77ASP:A-80ASP:A-84ARG:A-157ARG:A-173ASN:A-219SER:A-223LYS:A-226GLU:A-227ARG:A-230TRP:A-308HIS:A-309
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Explore in 3DM-CSA Motif Definition
Up to 10 residues are supported for Structure Motif searching, this motif has 13 residues.
EC: 4.6.1.5 (PDB Primary Data)
EC: 4.2.3.7 (UniProt)