Crystal structure of Yersinia pseudotuberculosis-derived mitogen (YPM)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | d1pm4c_ | All beta proteins | Superantigen (mitogen) Ypm | Superantigen (mitogen) Ypm | Superantigen (mitogen) Ypm | Superantigen (mitogen) Ypm | (Yersinia pseudotuberculosis ) [TaxId: 633 ], | SCOPe (2.08) |
| B | d1pm4b_ | All beta proteins | Superantigen (mitogen) Ypm | Superantigen (mitogen) Ypm | Superantigen (mitogen) Ypm | Superantigen (mitogen) Ypm | (Yersinia pseudotuberculosis ) [TaxId: 633 ], | SCOPe (2.08) |
| A | d1pm4a_ | All beta proteins | Superantigen (mitogen) Ypm | Superantigen (mitogen) Ypm | Superantigen (mitogen) Ypm | Superantigen (mitogen) Ypm | (Yersinia pseudotuberculosis ) [TaxId: 633 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C | SCOP2B Superfamily | Superantigen (mitogen) Ypm | 8038948 | 3001598 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Superantigen (mitogen) Ypm | 8038948 | 3001598 | SCOP2B (2022-06-29) |
| A | SCOP2 Family | Superantigen (mitogen) Ypm | 8026569 | 4000827 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Superantigen (mitogen) Ypm | 8038948 | 3001598 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | YpM | e1pm4C1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: YpM | ECOD (1.6) |
| B | YpM | e1pm4B1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: YpM | ECOD (1.6) |
| A | YpM | e1pm4A1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: YpM | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C | 2.60.120.510 | Mainly Beta | Sandwich | Jelly Rolls | Mitogen Ypm | CATH (4.3.0) |
| B | 2.60.120.510 | Mainly Beta | Sandwich | Jelly Rolls | Mitogen Ypm | CATH (4.3.0) |
| A | 2.60.120.510 | Mainly Beta | Sandwich | Jelly Rolls | Mitogen Ypm | CATH (4.3.0) |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR036475 | Mitogen Ypm superfamily | Homologous Superfamily | |
| IPR015227 | Mitogen, Yersinia pseudotuberculosis | Family |
