1P5D | pdb_00001p5d

Enzyme-ligand complex of P. aeruginosa PMM/PGM

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation
Structure Motif: Primary M-CSA Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth X]	d1p5dx2	Alpha and beta proteins (a/b)	Phosphoglucomutase, first 3 domains	Phosphoglucomutase, first 3 domains	Phosphoglucomutase, first 3 domains	Phosphomannomutase/phosphoglucomutase, middle and C-terminal domain	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
A [auth X]	d1p5dx1	Alpha and beta proteins (a/b)	Phosphoglucomutase, first 3 domains	Phosphoglucomutase, first 3 domains	Phosphoglucomutase, first 3 domains	Phosphomannomutase/phosphoglucomutase, N-terminal domain	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
A [auth X]	d1p5dx4	Alpha and beta proteins (a+b)	TBP-like	Phosphoglucomutase, C-terminal domain	Phosphoglucomutase, C-terminal domain	Phosphomannomutase/phosphoglucomutase	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth X]	SCOP2 Family	Phosphoglucomutase, first 3 domains	8025860	4000812	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Family	Phosphoglucomutase, first 3 domains	8025861	4000812	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Family	Phosphoglucomutase, first 3 domains	8025862	4000812	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Family	Phosphoglucomutase C-terminal domain-like	8025863	4002037	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Superfamily	Phosphoglucomutase, first 3 domains	8038239	3001532	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Superfamily	Phosphoglucomutase, first 3 domains	8038240	3001532	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Superfamily	Phosphoglucomutase, first 3 domains	8038241	3001532	SCOP2 (2022-06-29)
A [auth X]	SCOP2 Superfamily	Phosphoglucomutase C-terminal domain-like	8038242	3000732	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth X]		e1p5dX1	A: TBP-like	X: Phosphoglucomutase, C-terminal domain	H: Phosphoglucomutase, C-terminal domain	T: PGM_PMM_IV	F:	ECOD (20:10:01)
A [auth X]		e1p5dX2	A: Phosphoglucomutase, first 3 domains	X: Phosphoglucomutase, first 3 domains	H: Phosphoglucomutase, first 3 domains	T: PGM_PMM_III	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth X]	3.40.120.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha-D-Glucose-1,6-Bisphosphate	Chain A, domain 3	CATH (4.3.0)
A [auth X]	3.30.310.50	Alpha Beta	2-Layer Sandwich	TATA-Binding Protein	Alpha-D-phosphohexomutase, C-terminal domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth X]	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I (PGM_PMM_I)	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I		Domain
A [auth X]	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II (PGM_PMM_II)	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II		Domain
A [auth X]	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain (PGM_PMM_IV)	Phosphoglucomutase/phosphomannomutase, C-terminal domain		Domain
A [auth X]	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III (PGM_PMM_III)	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth X]	Phosphomannomutase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding phosphoglucomutase activity isomerase activity intramolecular phosphotransferase activity catalytic activity intramolecular transferase activity phosphomannomutase activity	lipopolysaccharide biosynthetic process carbohydrate derivative biosynthetic process carbohydrate metabolic process polysaccharide biosynthetic process carbohydrate biosynthetic process liposaccharide metabolic process lipid biosynthetic process carbohydrate derivative metabolic process primary metabolic process macromolecule biosynthetic process O antigen biosynthetic process lipopolysaccharide metabolic process polysaccharide metabolic process biosynthetic process lipopolysaccharide biosynthetic process carbohydrate derivative biosynthetic process carbohydrate metabolic process polysaccharide biosynthetic process carbohydrate biosynthetic process liposaccharide metabolic process lipid biosynthetic process carbohydrate derivative metabolic process primary metabolic process macromolecule biosynthetic process O antigen biosynthetic process lipopolysaccharide metabolic process polysaccharide metabolic process biosynthetic process metabolic process cellular process macromolecule metabolic process lipid metabolic process alginic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process small molecule metabolic process nucleoside phosphate metabolic process nucleotide-sugar metabolic process nucleobase-containing compound biosynthetic process nucleobase-containing compound metabolic process organophosphate metabolic process organophosphate biosynthetic process nucleobase-containing small molecule metabolic process nucleoside phosphate biosynthetic process phosphate-containing compound metabolic process GDP-mannose biosynthetic process nucleotide-sugar biosynthetic process phosphorus metabolic process GDP-mannose metabolic process oligosaccharide metabolic process lipopolysaccharide core region biosynthetic process oligosaccharide biosynthetic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth X]	IPR005843	Alpha-D-phosphohexomutase, C-terminal	Domain
A [auth X]	IPR005846	Alpha-D-phosphohexomutase, alpha/beta/alpha domain III	Domain
A [auth X]	IPR005845	Alpha-D-phosphohexomutase, alpha/beta/alpha domain II	Domain
A [auth X]	IPR016055	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	Homologous Superfamily
A [auth X]	IPR016066	Alpha-D-phosphohexomutase, conserved site	Conserved Site
A [auth X]	IPR005844	Alpha-D-phosphohexomutase, alpha/beta/alpha domain I	Domain
A [auth X]	IPR005841	Alpha-D-phosphohexomutase superfamily	Family
A [auth X]	IPR036900	Alpha-D-phosphohexomutase, C-terminal domain superfamily	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A [auth X]	SEP	Parent Component: SER RESID: AA0037 PSI-MOD : O-phospho-L-serine MOD:00046

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

Chains	Enzyme Name	Description	Catalytic Residues
A [auth X]	phosphomannomutase/ phosphoglucomutase M-CSA #194	Phosphomannomutase or phosphoglucomutase (PMM/PGM) from Pseudomonas aeruginosa can catalyse the same reaction in two different substrates. It catalyses the transfer of a phosphoryl group from the 6 position to the 1 position in either mannose 6-P or glucose 6-P. PMM/PGM activity is required for the biosynthesis of lipopolysaccharides in Pseudomonas aeruginosa.	Defined by 9 residues: ARG:A-20 [auth X-20]SER:A-108 [auth X-108]HIS:A-109 [auth X-109]LYS:A-118 [auth X-118]ASP:A-242 [auth X-242]ASP:A-244 [auth X-244]ASP:A-246 [auth X-246]ARG:A-247 [auth X-247]HIS:A-329 [auth X-329] \| Explore in 3D: M-CSA Motif Definition Search M-CSA Motif EC: 5.4.2.8 (PDB Primary Data) Search M-CSA Motif + EC 5.4.2.8 EC: 5.4.2.2 (UniProt) Search M-CSA Motif + EC 5.4.2.2

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.