1OZB
Crystal Structure of SecB complexed with SecA C-terminus
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Bacterial protein-export protein SecB | 8025598 | 4001100 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | SecB-like | 8037977 | 3000756 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | SecB-like | 8037977 | 3000756 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | SecB-like | 8037977 | 3000756 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | SecB-like | 8037977 | 3000756 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | SecB-like | 8037977 | 3000756 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | SecB-like | 8037977 | 3000756 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | SecB-like | 8037977 | 3000756 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | SecB-like | 8037977 | 3000756 | SCOP2B (2022-06-29) |
I | SCOP2 Family | Sec-C motif | 8025609 | 4001879 | SCOP2 (2022-06-29) |
I | SCOP2 Superfamily | Sec-C motif | 8037988 | 3000493 | SCOP2 (2022-06-29) |
J | SCOP2B Superfamily | Sec-C motif | 8037988 | 3000493 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02556 | e1ozbA1 | A: a+b two layers | X: Bacterial protein-export protein SecB (From Topology) | H: Bacterial protein-export protein SecB (From Topology) | T: Bacterial protein-export protein SecB | F: PF02556 | ECOD (1.6) |
B | PF02556 | e1ozbB1 | A: a+b two layers | X: Bacterial protein-export protein SecB (From Topology) | H: Bacterial protein-export protein SecB (From Topology) | T: Bacterial protein-export protein SecB | F: PF02556 | ECOD (1.6) |
C | PF02556 | e1ozbC1 | A: a+b two layers | X: Bacterial protein-export protein SecB (From Topology) | H: Bacterial protein-export protein SecB (From Topology) | T: Bacterial protein-export protein SecB | F: PF02556 | ECOD (1.6) |
D | PF02556 | e1ozbD1 | A: a+b two layers | X: Bacterial protein-export protein SecB (From Topology) | H: Bacterial protein-export protein SecB (From Topology) | T: Bacterial protein-export protein SecB | F: PF02556 | ECOD (1.6) |
E | PF02556 | e1ozbE1 | A: a+b two layers | X: Bacterial protein-export protein SecB (From Topology) | H: Bacterial protein-export protein SecB (From Topology) | T: Bacterial protein-export protein SecB | F: PF02556 | ECOD (1.6) |
F | PF02556 | e1ozbF1 | A: a+b two layers | X: Bacterial protein-export protein SecB (From Topology) | H: Bacterial protein-export protein SecB (From Topology) | T: Bacterial protein-export protein SecB | F: PF02556 | ECOD (1.6) |
G | PF02556 | e1ozbG1 | A: a+b two layers | X: Bacterial protein-export protein SecB (From Topology) | H: Bacterial protein-export protein SecB (From Topology) | T: Bacterial protein-export protein SecB | F: PF02556 | ECOD (1.6) |
H | PF02556 | e1ozbH1 | A: a+b two layers | X: Bacterial protein-export protein SecB (From Topology) | H: Bacterial protein-export protein SecB (From Topology) | T: Bacterial protein-export protein SecB | F: PF02556 | ECOD (1.6) |
I | PF02810 | e1ozbI1 | A: few secondary structure elements | X: Sec-C motif (From Topology) | H: Sec-C motif (From Topology) | T: Sec-C motif | F: PF02810 | ECOD (1.6) |
J | PF02810 | e1ozbJ1 | A: few secondary structure elements | X: Sec-C motif (From Topology) | H: Sec-C motif (From Topology) | T: Sec-C motif | F: PF02810 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.420.10 | Alpha Beta | Roll | Bacterial Protein-export protein SecB | SecB-like | CATH (4.3.0) |
B | 3.10.420.10 | Alpha Beta | Roll | Bacterial Protein-export protein SecB | SecB-like | CATH (4.3.0) |
C | 3.10.420.10 | Alpha Beta | Roll | Bacterial Protein-export protein SecB | SecB-like | CATH (4.3.0) |
D | 3.10.420.10 | Alpha Beta | Roll | Bacterial Protein-export protein SecB | SecB-like | CATH (4.3.0) |
E | 3.10.420.10 | Alpha Beta | Roll | Bacterial Protein-export protein SecB | SecB-like | CATH (4.3.0) |
F | 3.10.420.10 | Alpha Beta | Roll | Bacterial Protein-export protein SecB | SecB-like | CATH (4.3.0) |
G | 3.10.420.10 | Alpha Beta | Roll | Bacterial Protein-export protein SecB | SecB-like | CATH (4.3.0) |
H | 3.10.420.10 | Alpha Beta | Roll | Bacterial Protein-export protein SecB | SecB-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR035958 | SecB-like superfamily | Homologous Superfamily | |
IPR003708 | Bacterial protein export chaperone SecB | Family | |
IPR011130 | SecA, preprotein cross-linking domain | Domain | |
IPR011116 | SecA Wing/Scaffold | Domain | |
IPR036266 | SecA, Wing/Scaffold superfamily | Homologous Superfamily | |
IPR001650 | Helicase, C-terminal domain-like | Domain | |
IPR000185 | Protein translocase subunit SecA | Family | |
IPR014001 | Helicase superfamily 1/2, ATP-binding domain | Domain | |
IPR004027 | SEC-C motif | Conserved Site | |
IPR014018 | SecA motor DEAD | Domain | |
IPR020937 | SecA conserved site | Conserved Site | |
IPR011115 | SecA DEAD-like, N-terminal | Domain | |
IPR044722 | SecA, C-terminal helicase domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR036670 | SecA, preprotein cross-linking domain superfamily | Homologous Superfamily |