1OJ7 | pdb_00001oj7

STRUCTURAL GENOMICS, UNKNOWN FUNCTION CRYSTAL STRUCTURE OF E. COLI K-12 YQHD

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1oj7d1	Multi-domain proteins (alpha and beta)	Dehydroquinate synthase-like	Dehydroquinate synthase-like	Iron-containing alcohol dehydrogenase	Hypothetical oxidoreductase yqhD	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
D	d1oj7d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
C	d1oj7c1	Multi-domain proteins (alpha and beta)	Dehydroquinate synthase-like	Dehydroquinate synthase-like	Iron-containing alcohol dehydrogenase	Hypothetical oxidoreductase yqhD	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
C	d1oj7c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
B	d1oj7b1	Multi-domain proteins (alpha and beta)	Dehydroquinate synthase-like	Dehydroquinate synthase-like	Iron-containing alcohol dehydrogenase	Hypothetical oxidoreductase yqhD	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
B	d1oj7b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
A	d1oj7a1	Multi-domain proteins (alpha and beta)	Dehydroquinate synthase-like	Dehydroquinate synthase-like	Iron-containing alcohol dehydrogenase	Hypothetical oxidoreductase yqhD	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
A	d1oj7a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Dehydroquinate synthase-like	8038053	3001905	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Dehydroquinate synthase-like	8038053	3001905	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Dehydroquinate synthase-like	8038053	3001905	SCOP2B (2022-06-29)
A	SCOP2 Family	Iron-containing alcohol dehydrogenase	8025674	4003591	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Dehydroquinate synthase-like	8038053	3001905	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D		e1oj7D1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: p53 tetramerization domain	H: p53 tetramerization domain	T: Cation_efflux	F:	ECOD (20:10:01)
D		e1oj7D2	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: Hexokinase_2	F:	ECOD (20:10:01)
C		e1oj7C1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: p53 tetramerization domain	H: p53 tetramerization domain	T: Cation_efflux	F:	ECOD (20:10:01)
C		e1oj7C2	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: Hexokinase_2	F:	ECOD (20:10:01)
B		e1oj7B1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: p53 tetramerization domain	H: p53 tetramerization domain	T: Cation_efflux	F:	ECOD (20:10:01)
B		e1oj7B2	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: Hexokinase_2	F:	ECOD (20:10:01)
A		e1oj7A1	A: alpha-helical domain in dehydroquinate synthase-like enzymes	X: alpha-helical domain in dehydroquinate synthase-like enzymes	H: alpha-helical domain in dehydroquinate synthase-like enzymes	T: ADH_Fe_C	F:	ECOD (20:10:01)
A		e1oj7A2	A: Flavodoxin-like	X: Class I glutamine amidotransferase-like	H: Rossmann-like domain in dehydroquinate synthase-like enzymes	T: Fe-ADH	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.50.1970	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
D	1.20.1090.10	Mainly Alpha	Up-down Bundle	Dehydroquinate synthase-like, alpha domain	Dehydroquinate synthase-like - alpha domain	CATH (4.3.0)
C	3.40.50.1970	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
C	1.20.1090.10	Mainly Alpha	Up-down Bundle	Dehydroquinate synthase-like, alpha domain	Dehydroquinate synthase-like - alpha domain	CATH (4.3.0)
B	3.40.50.1970	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
B	1.20.1090.10	Mainly Alpha	Up-down Bundle	Dehydroquinate synthase-like, alpha domain	Dehydroquinate synthase-like - alpha domain	CATH (4.3.0)
A	3.40.50.1970	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
A	1.20.1090.10	Mainly Alpha	Up-down Bundle	Dehydroquinate synthase-like, alpha domain	Dehydroquinate synthase-like - alpha domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF25137	Fe-containing alcohol dehydrogenase family, C-terminal (ADH_Fe_C)	Fe-containing alcohol dehydrogenase family, C-terminal	This domain is found C-terminal in the family of iron- containing alcohol dehydrogenases. It is usually found associated with Pfam:PF00171 and Pfam:PF00465. It folds into an array of alpha-helices [1,2].	Domain
A, B, C, D	PF00465	Iron-containing alcohol dehydrogenase (Fe-ADH)	Iron-containing alcohol dehydrogenase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	HYPOTHETICAL OXIDOREDUCTASE YQHD	alcohol dehydrogenase [NAD(P)+] activity oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors alcohol dehydrogenase (NADP+) activity catalytic activity methylglyoxal reductase (NADPH) (acetol producing) activity butanol dehydrogenase (NAD+) activity alcohol dehydrogenase (NAD+) activity cation binding transition metal ion binding zinc ion binding ion binding binding alcohol dehydrogenase [NAD(P)+] activity oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors alcohol dehydrogenase (NADP+) activity catalytic activity methylglyoxal reductase (NADPH) (acetol producing) activity butanol dehydrogenase (NAD+) activity alcohol dehydrogenase (NAD+) activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding allyl-alcohol dehydrogenase activity identical protein binding protein binding	response to oxidative stress response to stimulus response to stress response to chemical response to oxygen-containing compound response to reactive oxygen species	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR044731	Butanol dehydrogenase-like	Family
A, B, C, D	IPR001670	Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA	Domain
A, B, C, D	IPR056798	Fe-containing alcohol dehydrogenase-like, C-terminal	Domain
A, B, C, D	IPR018211	Alcohol dehydrogenase, iron-type, conserved site	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.