1O1D | pdb_00001o1d

MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROM TOMOGRAMS OF INSECT FLIGHT MUSCLE


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
AA [auth 9]d1o1d9_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
BA [auth V]d1o1dv_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
DA [auth X]d1o1dx_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
EA [auth Y]d1o1dy_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
U [auth 2]d1o1d2_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
V [auth 3]d1o1d3_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
W [auth 4]d1o1d4_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
X [auth 5]d1o1d5_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
Y [auth 7]d1o1d7_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
Z [auth 8]d1o1d8_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
T [auth 1]d1o1d1_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
S [auth 0]d1o1d0_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
FA [auth Z]d1o1dz_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
CA [auth W]d1o1dw_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Oryctolagus cuniculus ) [TaxId: 9986 ], SCOPe (2.08)
Cd1o1dc_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Fd1o1df_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Ld1o1dl_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Rd1o1dr_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Od1o1do_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Id1o1di_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Ed1o1de_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Qd1o1dq_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Nd1o1dn_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Kd1o1dk_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Hd1o1dh_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Bd1o1db_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Ad1o1da_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Pd1o1dp_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Md1o1dm_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Jd1o1dj_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Gd1o1dg_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)
Dd1o1dd_ Low resolution protein structures Muscle protein complexes Muscle protein complexes Muscle protein complexes Averaged rigor crossbridges from tomograms of insect flight muscle (Gallus gallus ) [TaxId: 9031 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
AA [auth 9]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
AA [auth 9]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
BA [auth V]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
BA [auth V]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
DA [auth X]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
DA [auth X]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
EA [auth Y]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
EA [auth Y]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
U [auth 2]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
U [auth 2]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
V [auth 3]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
V [auth 3]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
W [auth 4]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
W [auth 4]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
X [auth 5]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
X [auth 5]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
Y [auth 7]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
Y [auth 7]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
Z [auth 8]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
Z [auth 8]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
T [auth 1]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
T [auth 1]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
S [auth 0]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
S [auth 0]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
FA [auth Z]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
FA [auth Z]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
CA [auth W]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
CA [auth W]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyEF-hand 8062903 3001983 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyEF-hand 8062903 3001983 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyEF-hand 8062903 3001983 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyEF-hand 8062903 3001983 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyEF-hand 8062903 3001983 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyEF-hand 8062903 3001983 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AA [auth 9]e1o1d93 A: Subtilisin-likeX: Subtilisin-likeH: Subtilisin-likeT: Phenol_HydroxF:ECOD (20:10:01)
BA [auth V]e1o1dV3 A: Subtilisin-likeX: Subtilisin-likeH: Subtilisin-likeT: Phenol_HydroxF:ECOD (20:10:01)
DA [auth X]e1o1dX3 A: Subtilisin-likeX: Subtilisin-likeH: Subtilisin-likeT: Phenol_HydroxF:ECOD (20:10:01)
EA [auth Y]e1o1dY3 A: Subtilisin-likeX: Subtilisin-likeH: Subtilisin-likeT: Phenol_HydroxF:ECOD (20:10:01)
U [auth 2]e1o1d23 A: Subtilisin-likeX: Subtilisin-likeH: Subtilisin-likeT: Phenol_HydroxF:ECOD (20:10:01)
V [auth 3]e1o1d33 A: Subtilisin-likeX: Subtilisin-likeH: Subtilisin-likeT: Phenol_HydroxF:ECOD (20:10:01)
W [auth 4]e1o1d43 A: Subtilisin-likeX: Subtilisin-likeH: Subtilisin-likeT: Phenol_HydroxF:ECOD (20:10:01)
X [auth 5]e1o1d53 A: Subtilisin-likeX: Subtilisin-likeH: Subtilisin-likeT: Phenol_HydroxF:ECOD (20:10:01)
Y [auth 7]e1o1d73 A: Subtilisin-likeX: Subtilisin-likeH: Subtilisin-likeT: Phenol_HydroxF:ECOD (20:10:01)
Z [auth 8]e1o1d83 A: Subtilisin-likeX: Subtilisin-likeH: Subtilisin-likeT: Phenol_HydroxF:ECOD (20:10:01)
T [auth 1]e1o1d13 A: Subtilisin-likeX: Subtilisin-likeH: Subtilisin-likeT: Phenol_HydroxF:ECOD (20:10:01)
S [auth 0]e1o1d01 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
FA [auth Z]e1o1dZ3 A: Subtilisin-likeX: Subtilisin-likeH: Subtilisin-likeT: Phenol_HydroxF:ECOD (20:10:01)
CA [auth W]e1o1dW3 A: Subtilisin-likeX: Subtilisin-likeH: Subtilisin-likeT: Phenol_HydroxF:ECOD (20:10:01)
Ce1o1dC4 A: Subtilisin-likeX: Subtilisin-likeH: Subtilisin-likeT: EF-hand_1, EF-hand_5, EF-hand_7F:ECOD (20:10:01)
Ce1o1dC2 A: OB-foldX: Rubredoxin-relatedH: Rubredoxin-relatedT: EF-hand_1, EF-hand_7F:ECOD (20:10:01)
Fe1o1dF4 A: Subtilisin-likeX: Subtilisin-likeH: Subtilisin-likeT: EF-hand_1, EF-hand_5, EF-hand_7F:ECOD (20:10:01)
Fe1o1dF2 A: OB-foldX: Rubredoxin-relatedH: Rubredoxin-relatedT: EF-hand_1, EF-hand_7F:ECOD (20:10:01)
Le1o1dL4 A: Subtilisin-likeX: Subtilisin-likeH: Subtilisin-likeT: EF-hand_1, EF-hand_5, EF-hand_7F:ECOD (20:10:01)
Le1o1dL2 A: OB-foldX: Rubredoxin-relatedH: Rubredoxin-relatedT: EF-hand_1, EF-hand_7F:ECOD (20:10:01)
Re1o1dR4 A: Subtilisin-likeX: Subtilisin-likeH: Subtilisin-likeT: EF-hand_1, EF-hand_5, EF-hand_7F:ECOD (20:10:01)
Re1o1dR2 A: OB-foldX: Rubredoxin-relatedH: Rubredoxin-relatedT: EF-hand_1, EF-hand_7F:ECOD (20:10:01)
Oe1o1dO4 A: Subtilisin-likeX: Subtilisin-likeH: Subtilisin-likeT: EF-hand_1, EF-hand_5, EF-hand_7F:ECOD (20:10:01)
Oe1o1dO2 A: OB-foldX: Rubredoxin-relatedH: Rubredoxin-relatedT: EF-hand_1, EF-hand_7F:ECOD (20:10:01)
Ie1o1dI4 A: Subtilisin-likeX: Subtilisin-likeH: Subtilisin-likeT: EF-hand_1, EF-hand_5, EF-hand_7F:ECOD (20:10:01)
Ie1o1dI2 A: OB-foldX: Rubredoxin-relatedH: Rubredoxin-relatedT: EF-hand_1, EF-hand_7F:ECOD (20:10:01)
Ee1o1dE1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
Qe1o1dQ1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
Ne1o1dN1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
Ke1o1dK1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
He1o1dH1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
Be1o1dB1 A: Alpha-beta plaitsX: Phage tail protein-likeH: Transmembrane protein 14AT: DHDPSF:ECOD (20:10:01)
Ae1o1dA1 A: amino-terminal domain of OmpATbX: amino-terminal domain of OmpATbH: amino-terminal domain of OmpATbT: BONF:ECOD (20:10:01)
Pe1o1dP1 A: amino-terminal domain of OmpATbX: amino-terminal domain of OmpATbH: amino-terminal domain of OmpATbT: BONF:ECOD (20:10:01)
Me1o1dM1 A: amino-terminal domain of OmpATbX: amino-terminal domain of OmpATbH: amino-terminal domain of OmpATbT: BONF:ECOD (20:10:01)
Je1o1dJ1 A: amino-terminal domain of OmpATbX: amino-terminal domain of OmpATbH: amino-terminal domain of OmpATbT: BONF:ECOD (20:10:01)
Ge1o1dG1 A: amino-terminal domain of OmpATbX: amino-terminal domain of OmpATbH: amino-terminal domain of OmpATbT: BONF:ECOD (20:10:01)
De1o1dD1 A: amino-terminal domain of OmpATbX: amino-terminal domain of OmpATbH: amino-terminal domain of OmpATbT: BONF:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00022Actin (Actin)Actin- Family
A, D, G, J, M
PF02736Myosin N-terminal SH3-like domain (Myosin_N)Myosin N-terminal SH3-like domainThis domain has an SH3-like fold. It is found at the N-terminus of many but not all myosins. The function of this domain is unknown. Domain
A, D, G, J, M
PF00063Myosin head (motor domain) (Myosin_head)Myosin head (motor domain)Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
SKELETAL MUSCLE ACTIN
C, F, I, L, O
SKELETAL MUSCLE MYOSIN II ESSENTIAL LIGHT CHAIN -
B, E, H, K, N
SKELETAL MUSCLE MYOSIN II REGULATORY LIGHT CHAIN
A, D, G, J, M
SKELETAL MUSCLE MYOSIN II

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR020902Actin/actin-like conserved siteConserved Site
IPR043129ATPase, nucleotide binding domainHomologous Superfamily
IPR004001Actin, conserved siteConserved Site
IPR004000Actin familyFamily
C, F, I, L, O
IPR050230Calmodulin/Myosin light chain/Troponin C-likeFamily
C, F, I, L, O
IPR002048EF-hand domainDomain
C, F, I, L, O
IPR011992EF-hand domain pairHomologous Superfamily
B, E, H, K, N
IPR018247EF-Hand 1, calcium-binding siteBinding Site
B, E, H, K, N
IPR002048EF-hand domainDomain
B, E, H, K, N
IPR011992EF-hand domain pairHomologous Superfamily
B, E, H, K, N
IPR050403Myosin regulatory light chainFamily
A, D, G, J, M
IPR036961Kinesin motor domain superfamilyHomologous Superfamily
A, D, G, J, M
IPR004009Myosin, SH3 domainDomain
A, D, G, J, M
IPR014751DNA repair protein XRCC4-like, C-terminalHomologous Superfamily
A, D, G, J, M
IPR001609Myosin head, motor domain-likeDomain
A, D, G, J, M
IPR002928Myosin tailDomain
A, D, G, J, M
IPR008989Myosin S1 fragment, N-terminalHomologous Superfamily
A, D, G, J, M
IPR000048IQ motif, EF-hand binding siteBinding Site
A, D, G, J, M
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, D, G, J, M
MLY Parent Component: LYS

RESIDAA0075

PSI-MOD :  N6,N6-dimethyl-L-lysine MOD:00084