1NJF
Nucleotide bound form of an isolated E. coli clamp loader gamma subunit
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8034548 | 3002019 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104152 | 3002834 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8034548 | 3002019 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104152 | 3002834 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104152 | 3002834 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RecA-like P-loop NTPases | 8034548 | 3002019 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RecA-like P-loop NTPases | 8034548 | 3002019 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104152 | 3002834 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | AAA_assoc_2_3 | e1njfA3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: AAA_assoc_2_3 | ECOD (1.6) |
A | Sigma54_activat | e1njfA4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
A | PRK07994 | e1njfA2 | A: few secondary structure elements | X: Zn-binding domain in DNA polymerase III subunits (From Topology) | H: Zn-binding domain in DNA polymerase III subunits (From Topology) | T: Zn-binding domain in DNA polymerase III subunits | F: PRK07994 | ECOD (1.6) |
B | AAA_assoc_2_3 | e1njfB4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: AAA_assoc_2_3 | ECOD (1.6) |
B | Sigma54_activat | e1njfB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
B | PRK07994 | e1njfB2 | A: few secondary structure elements | X: Zn-binding domain in DNA polymerase III subunits (From Topology) | H: Zn-binding domain in DNA polymerase III subunits (From Topology) | T: Zn-binding domain in DNA polymerase III subunits | F: PRK07994 | ECOD (1.6) |
C | AAA_assoc_2_3 | e1njfC4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: AAA_assoc_2_3 | ECOD (1.6) |
C | Sigma54_activat | e1njfC1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
C | PRK07994 | e1njfC2 | A: few secondary structure elements | X: Zn-binding domain in DNA polymerase III subunits (From Topology) | H: Zn-binding domain in DNA polymerase III subunits (From Topology) | T: Zn-binding domain in DNA polymerase III subunits | F: PRK07994 | ECOD (1.6) |
D | AAA_assoc_2_3 | e1njfD4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: AAA_assoc_2_3 | ECOD (1.6) |
D | Sigma54_activat | e1njfD3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
D | PRK07994 | e1njfD2 | A: few secondary structure elements | X: Zn-binding domain in DNA polymerase III subunits (From Topology) | H: Zn-binding domain in DNA polymerase III subunits (From Topology) | T: Zn-binding domain in DNA polymerase III subunits | F: PRK07994 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
A | 1.10.8.60 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
B | 1.10.8.60 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
C | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
C | 1.10.8.60 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
D | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
D | 1.10.8.60 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12169 | DNA polymerase III subunits gamma and tau domain III (DNA_pol3_gamma3) | DNA polymerase III subunits gamma and tau domain III | - | Family | |
PF13177 | DNA polymerase III, delta subunit (DNA_pol3_delta2) | DNA polymerase III, delta subunit | DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction [1]. The delta subunit is also known as ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001270 | ClpA/B family | Family | |
IPR021029 | DNA polymerase III, tau subunit, domain V | Domain | |
IPR008921 | DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal | Homologous Superfamily | |
IPR022754 | DNA polymerase III, gamma subunit, domain III | Domain | |
IPR012763 | DNA polymerase III, subunit gamma/ tau, N-terminal | Domain | |
IPR038249 | DNA polymerase III, tau subunit, domain V superfamily | Homologous Superfamily | |
IPR003593 | AAA+ ATPase domain | Domain | |
IPR022001 | DNA polymerase III subunit tau, DnaB-binding domain IV | Domain | |
IPR045085 | DNA polymerase III, subunit gamma/tau, helical lid domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |