1N1B | pdb_00001n1b

Crystal Structure of (+)-Bornyl Diphosphate Synthase from Sage

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1n1bb1	All alpha proteins	alpha/alpha toroid	Terpenoid cyclases/Protein prenyltransferases	Terpenoid cyclase N-terminal domain	(+)-bornyl diphosphate synthase	garden sage (Salvia officinalis ) [TaxId: 38868 ],	SCOPe (2.08)
B	d1n1bb2	All alpha proteins	Terpenoid synthases	Terpenoid synthases	Terpenoid cyclase C-terminal domain	(+)-bornyl diphosphate synthase	garden sage (Salvia officinalis ) [TaxId: 38868 ],	SCOPe (2.08)
A	d1n1ba1	All alpha proteins	alpha/alpha toroid	Terpenoid cyclases/Protein prenyltransferases	Terpenoid cyclase N-terminal domain	(+)-bornyl diphosphate synthase	garden sage (Salvia officinalis ) [TaxId: 38868 ],	SCOPe (2.08)
A	d1n1ba2	All alpha proteins	Terpenoid synthases	Terpenoid synthases	Terpenoid cyclase C-terminal domain	(+)-bornyl diphosphate synthase	garden sage (Salvia officinalis ) [TaxId: 38868 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Terpenoid cyclases/Protein prenyltransferases	8043990	3001024	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Terpenoid synthases	8043991	3001615	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Terpenoid synthases	8043991	3001615	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Terpenoid cyclases/Protein prenyltransferases	8043990	3001024	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e1n1bB1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: p53 tetramerization domain	H: p53 tetramerization domain	T: Cation_efflux	F:	ECOD (20:10:01)
B		e1n1bB2	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: Propep_M14	F:	ECOD (20:10:01)
A		e1n1bA1	A: Terpenoid synthases	X: Terpenoid synthases	H: Terpenoid synthases	T: Terpene_synth_C	F:	ECOD (20:10:01)
A		e1n1bA2	A: Repetitive alpha hairpins	X: alpha/alpha toroid	H: alpha/alpha toroid	T: Terpene_synth	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.50.10.130	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase	Terpene synthase, N-terminal domain	CATH (4.3.0)
B	1.10.600.10	Mainly Alpha	Orthogonal Bundle	Farnesyl Diphosphate Synthase	Farnesyl Diphosphate Synthase	CATH (4.3.0)
A	1.50.10.130	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase	Terpene synthase, N-terminal domain	CATH (4.3.0)
A	1.10.600.10	Mainly Alpha	Orthogonal Bundle	Farnesyl Diphosphate Synthase	Farnesyl Diphosphate Synthase	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	(+)-bornyl diphosphate synthase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding intramolecular lyase activity isomerase activity geranyl-diphosphate cyclase activity cyclase activity catalytic activity identical protein binding protein binding protein homodimerization activity cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding intramolecular lyase activity isomerase activity geranyl-diphosphate cyclase activity cyclase activity catalytic activity identical protein binding protein binding protein homodimerization activity protein dimerization activity camphene synthase activity carbon-oxygen lyase activity, acting on phosphates lyase activity carbon-oxygen lyase activity pinene synthase activity terpene synthase activity	diterpenoid metabolic process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process diterpenoid biosynthetic process biosynthetic process metabolic process cellular process terpenoid metabolic process isoprenoid metabolic process lipid metabolic process small molecule biosynthetic process monoterpenoid metabolic process diterpenoid metabolic process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process diterpenoid biosynthetic process biosynthetic process metabolic process cellular process terpenoid metabolic process isoprenoid metabolic process lipid metabolic process small molecule biosynthetic process monoterpenoid metabolic process ketone metabolic process monoterpenoid biosynthetic process (+)-camphor biosynthetic process small molecule metabolic process ketone biosynthetic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR005630	Terpene synthase, metal-binding domain	Domain
A, B	IPR008949	Isoprenoid synthase domain superfamily	Homologous Superfamily
A, B	IPR036965	Terpene synthase, N-terminal domain superfamily	Homologous Superfamily
A, B	IPR034741	Terpene cyclase-like 1, C-terminal domain	Domain
A, B	IPR044814	Terpene cyclases, class 1, plant	Family
A, B	IPR001906	Terpene synthase, N-terminal domain	Domain
A, B	IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	Homologous Superfamily
A, B	IPR050148	Terpene synthase-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.