Annotations: 1MMF

Crystal structure of substrate free form of glycerol dehydratase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F [auth M]	d1mmfm_	All alpha proteins	Open three-helical up-and-down bundle	Diol dehydratase, gamma subunit	Diol dehydratase, gamma subunit	Diol dehydratase, gamma subunit	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)
C [auth G]	d1mmfg_	All alpha proteins	Open three-helical up-and-down bundle	Diol dehydratase, gamma subunit	Diol dehydratase, gamma subunit	Diol dehydratase, gamma subunit	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)
E	d1mmfe_	Alpha and beta proteins (a/b)	Anticodon-binding domain-like	B12-dependent dehydatase associated subunit	Diol dehydratase, beta subunit	Diol dehydratase, beta subunit	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)
B	d1mmfb_	Alpha and beta proteins (a/b)	Anticodon-binding domain-like	B12-dependent dehydatase associated subunit	Diol dehydratase, beta subunit	Diol dehydratase, beta subunit	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)
D [auth L]	d1mmfl_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Cobalamin (vitamin B12)-dependent enzymes	Diol dehydratase, alpha subunit	Diol dehydratase, alpha subunit	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)
A	d1mmfa_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Cobalamin (vitamin B12)-dependent enzymes	Diol dehydratase, alpha subunit	Diol dehydratase, alpha subunit	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F [auth M]	SCOP2B Superfamily	Diol dehydratase, gamma subunit	8042541	3001460	SCOP2B (2022-06-29)
C [auth G]	SCOP2B Superfamily	Diol dehydratase, gamma subunit	8042541	3001460	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	B12-dependent dehydatase associated subunit	8042539	3000491	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	B12-dependent dehydatase associated subunit	8042539	3000491	SCOP2B (2022-06-29)
D [auth L]	SCOP2B Superfamily	Cobalamin (vitamin B12)-dependent enzymes	8042537	3000609	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cobalamin (vitamin B12)-dependent enzymes	8042537	3000609	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth M]	Gag_p24_C	e1mmfM1	A: alpha arrays	X: Urease, gamma-subunit	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: Gag_p24_C	ECOD (v295)
C [auth G]	Gag_p24_C	e1mmfG1	A: alpha arrays	X: Urease, gamma-subunit	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: Gag_p24_C	ECOD (v295)
E	Pribosyltran	e1mmfE1	A: alpha arrays	X: HTH	H: HTH	T: winged helix domain	F: Pribosyltran	ECOD (v295)
B	Pribosyltran	e1mmfB1	A: alpha arrays	X: HTH	H: HTH	T: winged helix domain	F: Pribosyltran	ECOD (v295)
D [auth L]	Enolase_C	e1mmfL1	A: alpha arrays	X: HTH	H: HTH	T: winged helix domain	F: Enolase_C	ECOD (v295)
A	Enolase_C	e1mmfA1	A: alpha arrays	X: HTH	H: HTH	T: winged helix domain	F: Enolase_C	ECOD (v295)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F [auth M]	1.10.1510.20	Mainly Alpha	Orthogonal Bundle	Hypothetical Protein Yqey	Chain: A	CATH (4.3.0)
C [auth G]	1.10.1510.20	Mainly Alpha	Orthogonal Bundle	Hypothetical Protein Yqey	Chain: A	CATH (4.3.0)
E	3.40.50.10150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	B12-dependent dehydatase associated subunit	CATH (4.3.0)
B	3.40.50.10150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	B12-dependent dehydatase associated subunit	CATH (4.3.0)
D [auth L]	3.20.20.350	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Diol/glycerol dehydratase, large subunit	CATH (4.3.0)
A	3.20.20.350	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Diol/glycerol dehydratase, large subunit	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth G], F [auth M]	glycerol dehydrase gamma subunit	hydro-lyase activity lyase activity propanediol dehydratase activity catalytic activity carbon-oxygen lyase activity glycerol dehydratase activity	-	-
B, E	glycerol dehydrase beta subunit	hydro-lyase activity lyase activity propanediol dehydratase activity catalytic activity carbon-oxygen lyase activity glycerol dehydratase activity	-	-
A, D [auth L]	glycerol dehydrase alpha subunit	vitamin binding binding cobalamin binding tetrapyrrole binding heterocyclic compound binding small molecule binding glycerol dehydratase activity hydro-lyase activity lyase activity catalytic activity carbon-oxygen lyase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth G], F [auth M]	IPR036091	Propanediol/glycerol dehydratase, small subunit superfamily	Homologous Superfamily
C [auth G], F [auth M]	IPR003207	Propanediol/glycerol dehydratase, small subunit	Family
B, E	IPR025541	Propanediol/glycerol dehydratase, medium subunit	Family
B, E	IPR003208	Diol/glycerol dehydratase/dehydratase reactivating factor	Family
B, E	IPR010254	B12-dependent dehydratases, beta subunit	Homologous Superfamily
A, D [auth L]	IPR003206	Diol/glycerol dehydratase, large subunit	Domain
A, D [auth L]	IPR036999	Diol/glycerol dehydratase, large subunit superfamily	Homologous Superfamily
A, D [auth L]	IPR016176	Cobalamin (vitamin B12)-dependent enzyme, catalytic	Homologous Superfamily

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