1M8P | pdb_00001m8p

Crystal Structure of P. chrysogenum ATP Sulfurylase in the T-state

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d1m8pc1	All beta proteins	PUA domain-like	PUA domain-like	ATP sulfurylase N-terminal domain	ATP sulfurylase N-terminal domain	(Penicillium chrysogenum ) [TaxId: 5076 ],	SCOPe (2.08)
C	d1m8pc2	Alpha and beta proteins (a/b)	Adenine nucleotide alpha hydrolase-like	Nucleotidylyl transferase	ATP sulfurylase catalytic domain	ATP sulfurylase catalytic domain	(Penicillium chrysogenum ) [TaxId: 5076 ],	SCOPe (2.08)
C	d1m8pc3	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	ATP sulfurylase C-terminal domain	ATP sulfurylase C-terminal domain	(Penicillium chrysogenum ) [TaxId: 5076 ],	SCOPe (2.08)
B	d1m8pb1	All beta proteins	PUA domain-like	PUA domain-like	ATP sulfurylase N-terminal domain	ATP sulfurylase N-terminal domain	(Penicillium chrysogenum ) [TaxId: 5076 ],	SCOPe (2.08)
B	d1m8pb2	Alpha and beta proteins (a/b)	Adenine nucleotide alpha hydrolase-like	Nucleotidylyl transferase	ATP sulfurylase catalytic domain	ATP sulfurylase catalytic domain	(Penicillium chrysogenum ) [TaxId: 5076 ],	SCOPe (2.08)
B	d1m8pb3	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	ATP sulfurylase C-terminal domain	ATP sulfurylase C-terminal domain	(Penicillium chrysogenum ) [TaxId: 5076 ],	SCOPe (2.08)
A	d1m8pa1	All beta proteins	PUA domain-like	PUA domain-like	ATP sulfurylase N-terminal domain	ATP sulfurylase N-terminal domain	(Penicillium chrysogenum ) [TaxId: 5076 ],	SCOPe (2.08)
A	d1m8pa2	Alpha and beta proteins (a/b)	Adenine nucleotide alpha hydrolase-like	Nucleotidylyl transferase	ATP sulfurylase catalytic domain	ATP sulfurylase catalytic domain	(Penicillium chrysogenum ) [TaxId: 5076 ],	SCOPe (2.08)
A	d1m8pa3	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	ATP sulfurylase C-terminal domain	ATP sulfurylase C-terminal domain	(Penicillium chrysogenum ) [TaxId: 5076 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Nucleotidylyl transferase	8018703	3001541	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	P-loop nucleotide/nucleoside kinase-like	8018699	3002021	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PUA domain-like	8018705	3001015	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	P-loop nucleotide/nucleoside kinase-like	8018699	3002021	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PUA domain-like	8018705	3001015	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Nucleotidylyl transferase	8018703	3001541	SCOP2B (2022-06-29)
A	SCOP2 Family	APS kinase-like	8018698	4003930	SCOP2 (2022-06-29)
A	SCOP2 Family	ATP sulfurylase-like	8018702	4003381	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	P-loop nucleotide/nucleoside kinase-like	8018699	3002021	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Nucleotidylyl transferase	8018703	3001541	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PUA domain-like	8018705	3001015	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Peptidase_S46, Trypsin_2	e1m8pC1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: LigT-related	T: LigT-related	F: Peptidase_S46, Trypsin_2	ECOD (v294.1)
C	GBP	e1m8pC2	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: GBP	ECOD (v294.1)
C	Anticodon_3	e1m8pC3	A: a/b three-layered sandwiches	X: P-loop domains-like	H: beta-helix of amnionless (AMN) extracellular domain	T: beta-helix of amnionless (AMN) extracellular domain	F: Anticodon_3	ECOD (v294.1)
B	Peptidase_S46, Trypsin_2	e1m8pB1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: LigT-related	T: LigT-related	F: Peptidase_S46, Trypsin_2	ECOD (v294.1)
B	GBP	e1m8pB2	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: GBP	ECOD (v294.1)
B	Anticodon_3	e1m8pB3	A: a/b three-layered sandwiches	X: P-loop domains-like	H: beta-helix of amnionless (AMN) extracellular domain	T: beta-helix of amnionless (AMN) extracellular domain	F: Anticodon_3	ECOD (v294.1)
A	APS_kinase	e1m8pA2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: APS_kinase	ECOD (v294.1)
A	Peptidase_S46, Trypsin_2	e1m8pA1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: LigT-related	T: LigT-related	F: Peptidase_S46, Trypsin_2	ECOD (v294.1)
A	Anticodon_3	e1m8pA3	A: a/b three-layered sandwiches	X: P-loop domains-like	H: beta-helix of amnionless (AMN) extracellular domain	T: beta-helix of amnionless (AMN) extracellular domain	F: Anticodon_3	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.40.50.620	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HUPs	CATH (4.3.0)
C	3.10.400.10	Alpha Beta	Roll	Sulfate adenylyltransferase	Sulfate adenylyltransferase	CATH (4.3.0)
C	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
B	3.40.50.620	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HUPs	CATH (4.3.0)
B	3.10.400.10	Alpha Beta	Roll	Sulfate adenylyltransferase	Sulfate adenylyltransferase	CATH (4.3.0)
B	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
A	3.40.50.620	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HUPs	CATH (4.3.0)
A	3.10.400.10	Alpha Beta	Roll	Sulfate adenylyltransferase	Sulfate adenylyltransferase	CATH (4.3.0)
A	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	sulfate adenylyltransferase	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding adenylyltransferase activity transferase activity sulfate adenylyltransferase (ATP) activity sulfate adenylyltransferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups kinase activity adenylylsulfate kinase activity phosphotransferase activity, alcohol group as acceptor	sulfur compound biosynthetic process biosynthetic process sulfur compound metabolic process metabolic process cellular process hydrogen sulfide biosynthetic process hydrogen sulfide metabolic process sulfate assimilation sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) sulfate assimilation via adenylyl sulfate reduction	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR015947	PUA-like superfamily	Homologous Superfamily
A, B, C	IPR025980	ATP-sulfurylase PUA-like domain	Domain
A, B, C	IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	Homologous Superfamily
A, B, C	IPR027535	Sulfate adenylyltransferase	Family
A, B, C	IPR002891	APS kinase	Family
A, B, C	IPR059117	APS kinase domain	Domain
A, B, C	IPR002650	Sulphate adenylyltransferase	Family
A, B, C	IPR024951	Sulphate adenylyltransferase catalytic domain	Domain
A, B, C	IPR050512	Sulfate Adenylyltransferase/APS Kinase	Family
A, B, C	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.