1M72

Crystal Structure of Caspase-1 from Spodoptera frugiperda

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1m72a_	Alpha and beta proteins (a/b)	Caspase-like	Caspase-like	Caspase catalytic domain	Caspase-1	fall armyworm (Spodoptera frugiperda ) [TaxId: 7108 ],	SCOPe (2.08)
C [auth B]	d1m72b_	Alpha and beta proteins (a/b)	Caspase-like	Caspase-like	Caspase catalytic domain	Caspase-1	fall armyworm (Spodoptera frugiperda ) [TaxId: 7108 ],	SCOPe (2.08)
E [auth C]	d1m72c1	Alpha and beta proteins (a/b)	Caspase-like	Caspase-like	Caspase catalytic domain	Caspase-1	fall armyworm (Spodoptera frugiperda ) [TaxId: 7108 ],	SCOPe (2.08)
E [auth C]	d1m72c2	Artifacts	Tags	Tags	Tags	C-terminal Tags	fall armyworm (Spodoptera frugiperda ) [TaxId: 7108 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Caspase-like	8036327	3001096	SCOP2B (2022-06-29)
C [auth B]	SCOP2 Family	Caspase catalytic domain	8023948	4003593	SCOP2 (2022-06-29)
C [auth B]	SCOP2 Superfamily	Caspase-like	8036327	3001096	SCOP2 (2022-06-29)
E [auth C]	SCOP2B Superfamily	Caspase-like	8036327	3001096	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00656	e1m72A1	A: a/b three-layered sandwiches	X: Caspase-like (From Topology)	H: Caspase-like (From Topology)	T: Caspase-like	F: PF00656	ECOD (1.6)
C [auth B]	PF00656	e1m72B1	A: a/b three-layered sandwiches	X: Caspase-like (From Topology)	H: Caspase-like (From Topology)	T: Caspase-like	F: PF00656	ECOD (1.6)
E [auth C]	PF00656	e1m72C1	A: a/b three-layered sandwiches	X: Caspase-like (From Topology)	H: Caspase-like (From Topology)	T: Caspase-like	F: PF00656	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.1460	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
C [auth B]	3.40.50.1460	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
E [auth C]	3.40.50.1460	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth B], E [auth C]	PF00656	Caspase domain (Peptidase_C14)	Caspase domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C [auth B], E [auth C]	Caspase-1	cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity catalytic activity endopeptidase activity	cellular process apoptotic process cell death programmed cell death organic substance metabolic process organonitrogen compound metabolic process proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process	-
B [auth D], D [auth E], F	Ace-Asp-Glu-Val-Asp-chloromethylketone	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C [auth B], E [auth C]	IPR016129	Peptidase family C14A, His active site	Active Site
A, C [auth B], E [auth C]	IPR001309	Peptidase C14, p20 domain	Domain
A, C [auth B], E [auth C]	IPR029030	Caspase-like domain superfamily	Homologous Superfamily
A, C [auth B], E [auth C]	IPR033139	Peptidase family C14A, cysteine active site	Active Site
A, C [auth B], E [auth C]	IPR002138	Peptidase C14, caspase non-catalytic subunit p10	Domain
A, C [auth B], E [auth C]	IPR015917	Peptidase C14A, caspase catalytic domain	Domain
A, C [auth B], E [auth C]	IPR011600	Peptidase C14, caspase domain	Domain

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth D], D [auth E], F	0QE
B [auth D], D [auth E], F	ACE	RESID: AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 PSI-MOD : N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.