Crystal Structure Of 3',5"-Aminoglycoside Phosphotransferase Type IIIa ADP Kanamycin A Complex
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- AMR Gene: CARD Annotation
- AMR Gene Family: CARD Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Structure Motif: Primary M-CSA Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d1l8ta_ | Alpha and beta proteins (a+b) | Protein kinase-like (PK-like) | Protein kinase-like (PK-like) | APH phosphotransferases | Type IIIa 3',5'-aminoglycoside phosphotransferase | (Enterococcus faecalis ) [TaxId: 1351 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 3.30.200.20 | Alpha Beta | 2-Layer Sandwich | Phosphorylase Kinase | domain 1 | CATH (4.3.0) |
| A | 3.90.1200.10 | Alpha Beta | Alpha-Beta Complex | Aminoglycoside 3'-phosphotransferase | Chain: A, domain 2 | CATH (4.3.0) |
AMR Gene: CARD Annotation CARD Database Homepage
| Chains | Accession | Short Name | Description | Provenance Source (Version) |
|---|---|---|---|---|
| ARO:3002647 | APH(3')-IIIa | APH(3')-IIIa is a plasmid-encoded aminoglycoside phosphotransferase in S. aureus and Enterococcus spp. | CARD (4.0.1) |
AMR Gene Family: CARD Annotation CARD Database Homepage
| Chains | Accession | Gene Family | Drug Class | Resistance Machanism | Provenance Source (Version) |
|---|---|---|---|---|---|
| ARO:3000126 | APH(3') | aminoglycoside antibiotic | antibiotic inactivation | CARD (4.0.1) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR051678 | Aminoglycoside Phosphotransferase Enzymes | Family | |
| IPR024165 | Aminoglycoside 3-phosphotransferase | Family | |
| IPR002575 | Aminoglycoside phosphotransferase | Domain | |
| IPR011009 | Protein kinase-like domain superfamily | Homologous Superfamily |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
| Chains | Enzyme Name | Description | Catalytic Residues |
|---|---|---|---|
| kanamycin kinase M-CSA #640 | Aminoglycosides are potent antibiotics which bind to the prokaryotic 16S ribosomal subunit, inhibiting protein synthesis. Resistance to these antibiotics however has developed in many bacterial species due to the enzyme aminoglycoside kinase which is able to catalyse the phosphorylation of the aminoglycoside resulting in its inactivation. Kinetic and structural studies of this enzyme therefore are vital in prevention and understanding of antibiotic resistance. The enzyme shows structural alignment, despite very low sequence conservation, to eukaryotic protein kinases indicating a possible evolutionary relationship. | Defined by 4 residues: LYS:A-43 [auth A-44]ASP:A-189 [auth A-190]ASN:A-194 [auth A-195]ASP:A-207 [auth A-208] | EC: 2.7.1.95 (PDB Primary Data) |














