1L0Q | pdb_00001l0q

Tandem YVTN beta-propeller and PKD domains from an archaeal surface layer protein

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1l0qd1	All beta proteins	Immunoglobulin-like beta-sandwich	PKD domain	PKD domain	Surface layer protein	(Methanosarcina mazei S-6 ) [TaxId: 213585 ],	SCOPe (2.08)
D	d1l0qd2	All beta proteins	7-bladed beta-propeller	YVTN repeat-like/Quinoprotein amine dehydrogenase	YVTN repeat	Surface layer protein	(Methanosarcina mazei S-6 ) [TaxId: 213585 ],	SCOPe (2.08)
C	d1l0qc1	All beta proteins	Immunoglobulin-like beta-sandwich	PKD domain	PKD domain	Surface layer protein	(Methanosarcina mazei S-6 ) [TaxId: 213585 ],	SCOPe (2.08)
C	d1l0qc2	All beta proteins	7-bladed beta-propeller	YVTN repeat-like/Quinoprotein amine dehydrogenase	YVTN repeat	Surface layer protein	(Methanosarcina mazei S-6 ) [TaxId: 213585 ],	SCOPe (2.08)
B	d1l0qb1	All beta proteins	Immunoglobulin-like beta-sandwich	PKD domain	PKD domain	Surface layer protein	(Methanosarcina mazei S-6 ) [TaxId: 213585 ],	SCOPe (2.08)
B	d1l0qb2	All beta proteins	7-bladed beta-propeller	YVTN repeat-like/Quinoprotein amine dehydrogenase	YVTN repeat	Surface layer protein	(Methanosarcina mazei S-6 ) [TaxId: 213585 ],	SCOPe (2.08)
A	d1l0qa1	All beta proteins	Immunoglobulin-like beta-sandwich	PKD domain	PKD domain	Surface layer protein	(Methanosarcina mazei S-6 ) [TaxId: 213585 ],	SCOPe (2.08)
A	d1l0qa2	All beta proteins	7-bladed beta-propeller	YVTN repeat-like/Quinoprotein amine dehydrogenase	YVTN repeat	Surface layer protein	(Methanosarcina mazei S-6 ) [TaxId: 213585 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	YVTN repeat-like/Quinoprotein amine dehydrogenase	8042865	3001671	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	PKD domain	8055205	3002045	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PKD domain	8055205	3002045	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	YVTN repeat-like/Quinoprotein amine dehydrogenase	8042865	3001671	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	YVTN repeat-like/Quinoprotein amine dehydrogenase	8042865	3001671	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PKD domain	8055205	3002045	SCOP2B (2022-06-29)
A	SCOP2 Family	YVTN repeat	8030486	4002745	SCOP2 (2022-06-29)
A	SCOP2 Family	PKD domain	8055204	4007526	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YVTN repeat-like/Quinoprotein amine dehydrogenase	8042865	3001671	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PKD domain	8055205	3002045	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Copper-bind	e1l0qD1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (v294.1)
D	Lactonase, YNCE, choice_anch_I	e1l0qD2	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Lactonase, YNCE, choice_anch_I	ECOD (v294.1)
C	Copper-bind	e1l0qC1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (v294.1)
C	Lactonase, YNCE, choice_anch_I	e1l0qC2	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Lactonase, YNCE, choice_anch_I	ECOD (v294.1)
B	Copper-bind	e1l0qB1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (v294.1)
B	Lactonase, YNCE, choice_anch_I	e1l0qB2	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Lactonase, YNCE, choice_anch_I	ECOD (v294.1)
A	PKD	e1l0qA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PKD	ECOD (v294.1)
A	Lactonase, YNCE, choice_anch_I	e1l0qA2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Lactonase, YNCE, choice_anch_I	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
D	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
C	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
C	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
B	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
B	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
A	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (4.3.0)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR011045	Nitrous oxide reductase, N-terminal	Homologous Superfamily
A, B, C, D	IPR035986	PKD domain superfamily	Homologous Superfamily
A, B, C, D	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B, C, D	IPR022409	PKD/Chitinase domain	Domain
A, B, C, D	IPR000601	PKD domain	Domain
A, B, C, D	IPR011964	YVTN beta-propeller repeat	Repeat
A, B, C, D	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A, B, C, D	IPR048433	YNCE-like beta-propeller	Domain
A, B, C, D	IPR051200	Multi-functional host-pathogen interaction and enzymatic activity protein	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D	OPM	Monotopic/peripheral	All beta monotopic/peripheral	Beta propellers	Lactonase, 7-bladed beta-propeller

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

Prepare Data

Validate Data

Deposit Data

Help and Resources

.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 1L0Q | pdb_00001l0q