1JQQ | pdb_00001jqq

Crystal structure of Pex13p(301-386) SH3 domain

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1jqqa1	All beta proteins	SH3-like barrel	SH3-domain	SH3-domain	Peroxisomal membrane protein Pex13p	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
A	d1jqqa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
B	d1jqqb1	All beta proteins	SH3-like barrel	SH3-domain	SH3-domain	Peroxisomal membrane protein Pex13p	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
B	d1jqqb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
C	d1jqqc_	All beta proteins	SH3-like barrel	SH3-domain	SH3-domain	Peroxisomal membrane protein Pex13p	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
D	d1jqqd_	All beta proteins	SH3-like barrel	SH3-domain	SH3-domain	Peroxisomal membrane protein Pex13p	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	SH3-domain	8037099	3000153	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	SH3-domain	8037099	3000153	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SH3-domain	8037099	3000153	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	SH3-domain	8037099	3000153	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	KOW, Ribosomal_L26	e1jqqA1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: KOW, Ribosomal_L26	ECOD (develop294)
B	KOW, Ribosomal_L26	e1jqqB1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: KOW, Ribosomal_L26	ECOD (develop294)
C	KOW, Ribosomal_L26	e1jqqC1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: KOW, Ribosomal_L26	ECOD (develop294)
D	KOW, Ribosomal_L26	e1jqqD1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: KOW, Ribosomal_L26	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
B	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
C	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
D	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00018	SH3 domain (SH3_1)	SH3 domain	SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase Swiss:P12931. The structure is a partly opened beta barrel.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	PEROXISOMAL MEMBRANE PROTEIN PAS20	macromolecule transmembrane transporter activity protein transporter activity protein transmembrane transporter activity transporter activity transmembrane transporter activity protein-macromolecule adaptor activity molecular adaptor activity	cellular localization establishment of protein localization protein localization to peroxisome protein transmembrane import into intracellular organelle transport peroxisomal membrane transport cellular component organization protein import into peroxisome matrix, docking localization peroxisome organization protein transmembrane transport establishment of localization in cell cellular component organization or biogenesis intracellular protein localization cellular localization establishment of protein localization protein localization to peroxisome protein transmembrane import into intracellular organelle transport peroxisomal membrane transport cellular component organization protein import into peroxisome matrix, docking localization peroxisome organization protein transmembrane transport establishment of localization in cell cellular component organization or biogenesis intracellular protein localization establishment of protein localization to peroxisome intracellular protein transmembrane transport intracellular transport protein import into peroxisome matrix establishment of localization peroxisomal transport transmembrane transport organelle organization establishment of protein localization to organelle protein transport protein localization to organelle macromolecule localization cellular process intracellular protein transport	membrane-bounded organelle intracellular anatomical structure membrane peroxisome intracellular membrane-bounded organelle microbody membrane intracellular organelle cellular anatomical structure bounding membrane of organelle organelle peroxisomal membrane microbody cytoplasm organelle membrane membrane-bounded organelle intracellular anatomical structure membrane peroxisome intracellular membrane-bounded organelle microbody membrane intracellular organelle cellular anatomical structure bounding membrane of organelle organelle peroxisomal membrane microbody cytoplasm organelle membrane peroxisomal importomer complex protein-containing complex transporter complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR001452	SH3 domain	Domain
A, B, C, D	IPR036028	SH3-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR007223	Peroxin 13, N-terminal	Domain
A, B, C, D	IPR035463	Peroxin 13	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.