1JOD | pdb_00001jod

Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1jodb_	All beta proteins	Olfactory marker protein	Olfactory marker protein	Olfactory marker protein	Olfactory marker protein	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d1joda_	All beta proteins	Olfactory marker protein	Olfactory marker protein	Olfactory marker protein	Olfactory marker protein	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Olfactory marker protein	8032913	3000363	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Olfactory marker protein	8032913	3000363	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	TPK_B1_binding	e1jodB1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: TPK_B1_binding	ECOD (v294.1)
A	TPK_B1_binding	e1jodA1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: TPK_B1_binding	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.120.390	Mainly Beta	Sandwich	Jelly Rolls	Olfactory marker	CATH (4.3.0)
A	2.60.120.390	Mainly Beta	Sandwich	Jelly Rolls	Olfactory marker	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF06554	Olfactory marker protein (Olfactory_mark)	Olfactory marker protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Olfactory Marker Protein	binding peptide binding	developmental process neurogenesis multicellular organism development multicellular organismal process cellular developmental process cell differentiation anatomical structure development cellular process nervous system development system development system process sensory perception of chemical stimulus sensory perception nervous system process developmental process neurogenesis multicellular organism development multicellular organismal process cellular developmental process cell differentiation anatomical structure development cellular process nervous system development system development system process sensory perception of chemical stimulus sensory perception nervous system process sensory perception of smell cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation signal transduction cell communication	dendrite terminus somatodendritic compartment cell projection cellular anatomical structure dendrite dendritic tree neuron projection plasma membrane bounded cell projection dendritic knob intracellular anatomical structure cytoplasm cytosol cell body neuronal cell body dendrite terminus somatodendritic compartment cell projection cellular anatomical structure dendrite dendritic tree neuron projection plasma membrane bounded cell projection dendritic knob intracellular anatomical structure cytoplasm cytosol cell body neuronal cell body axon membrane-bounded organelle sperm midpiece organelle cilium 9+2 motile cilium sperm flagellum motile cilium intracellular organelle nucleus intracellular membrane-bounded organelle acrosomal vesicle intracellular vesicle endomembrane system cytoplasmic vesicle secretory granule secretory vesicle vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036727	Olfactory marker superfamily	Homologous Superfamily
A, B	IPR009103	Olfactory marker protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.