1JOC | pdb_00001joc

EEA1 homodimer of C-terminal FYVE domain bound to inositol 1,3-diphosphate

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1jocb1	Small proteins	FYVE/PHD zinc finger	FYVE/PHD zinc finger	FYVE, a phosphatidylinositol-3-phosphate binding domain	Eea1	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1jocb2	Coiled coil proteins	Parallel coiled-coil	Eea1 homodimerisation domain	Eea1 homodimerisation domain	Eea1 homodimerisation domain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1joca1	Small proteins	FYVE/PHD zinc finger	FYVE/PHD zinc finger	FYVE, a phosphatidylinositol-3-phosphate binding domain	Eea1	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1joca2	Coiled coil proteins	Parallel coiled-coil	Eea1 homodimerisation domain	Eea1 homodimerisation domain	Eea1 homodimerisation domain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Eea1 homodimerisation domain	8037258	3001207	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	FYVE/PHD zinc finger	8037255	3001459	SCOP2B (2022-06-29)
A	SCOP2 Family	FYVE, a phosphatidylinositol-3-phosphate binding domain	8024876	4003768	SCOP2 (2022-06-29)
A	SCOP2 Family	Eea1 homodimerisation domain	8024879	4003659	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	FYVE/PHD zinc finger	8037255	3001459	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Eea1 homodimerisation domain	8037258	3001207	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e1jocB1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: EGF_CA	F:	ECOD (20:10:01)
A		e1jocA1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: EGF_CA	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.20.5.390	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	L1 transposable element, trimerization domain	CATH (4.3.0)
B	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
A	1.20.5.390	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces	L1 transposable element, trimerization domain	CATH (4.3.0)
A	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF01363	FYVE zinc finger (FYVE)	FYVE zinc finger	The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn++ ions [1]. The FYVE finger has eight potential zinc coordinating cysteine positions. Man ...	The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn++ ions [1]. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. We have included members which do not conserve these histidine residues but are clearly related.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Early Endosomal Autoantigen 1	GTP-dependent protein binding protein binding binding identical protein binding protein homodimerization activity protein dimerization activity 1-phosphatidylinositol binding phospholipid binding lipid binding phosphatidylinositol binding calmodulin binding cation binding transition metal ion binding zinc ion binding GTP-dependent protein binding protein binding binding identical protein binding protein homodimerization activity protein dimerization activity 1-phosphatidylinositol binding phospholipid binding lipid binding phosphatidylinositol binding calmodulin binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	cellular localization synaptic vesicle to endosome fusion transport intracellular transport establishment of localization vesicle-mediated transport endosomal transport synaptic vesicle endosomal processing organelle fusion cellular component organization vesicle organization localization organelle organization establishment of localization in cell cellular localization synaptic vesicle to endosome fusion transport intracellular transport establishment of localization vesicle-mediated transport endosomal transport synaptic vesicle endosomal processing organelle fusion cellular component organization vesicle organization localization organelle organization establishment of localization in cell endosome organization cellular process cellular component organization or biogenesis endomembrane system organization import into cell endocytosis membrane organization membrane fusion organelle membrane fusion vesicle fusion cellular response to stimulus trans-synaptic signaling multicellular organismal process regulation of biological process system process regulation of cellular process cell surface receptor signaling pathway response to stimulus nervous system process signaling biological regulation cell-cell signaling chemical synaptic transmission, postsynaptic chemical synaptic transmission cell communication synaptic signaling anterograde trans-synaptic signaling signal transduction biological process involved in interspecies interaction between organisms host-mediated perturbation of viral process modulation of process of another organism host-mediated perturbation of symbiont process vesicle-mediated transport between endosomal compartments early endosome to late endosome transport	extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol axon extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol axon cell projection axonal spine neuron spine neuron projection plasma membrane bounded cell projection synapse cell junction glutamatergic synapse early endosome endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle postsynaptic early endosome postsynaptic endosome postsynapse endosome membrane membrane early endosome membrane cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane organelle membrane recycling endosome Schaffer collateral - CA1 synapse presynapse presynaptic endosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR013087	Zinc finger C2H2-type	Domain
A, B	IPR017455	Zinc finger, FYVE-related	Domain
A, B	IPR000306	FYVE zinc finger	Domain
A, B	IPR011011	Zinc finger, FYVE/PHD-type	Homologous Superfamily
A, B	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q15075	amyotrophic lateral sclerosis glioblastoma invasive ductal breast carcinoma lung cancer myopathy periodontitis chronic obstructive pulmonary disease head and neck cancer juvenile dermatomyositis malignant ependymoma osteosarcoma psoriasis Gaucher disease hereditary spastic paraplegia large cell medulloblastoma amyotrophic lateral sclerosis glioblastoma invasive ductal breast carcinoma lung cancer myopathy periodontitis chronic obstructive pulmonary disease head and neck cancer juvenile dermatomyositis malignant ependymoma osteosarcoma psoriasis Gaucher disease hereditary spastic paraplegia large cell medulloblastoma malignant glioma ovarian cancer transitional cell carcinoma

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B	OPM	Monotopic/peripheral	All beta monotopic/peripheral	FYVE/PHD zinc finger	FYVE, a phosphatidylinositol-3-phosphate binding domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.