1JKV | pdb_00001jkv

Crystal Structure of Manganese Catalase from Lactobacillus plantarum complexed with azide

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d1jkvf_	All alpha proteins	Ferritin-like	Ferritin-like	Manganese catalase (T-catalase)	Manganese catalase (T-catalase)	(Lactiplantibacillus plantarum ) [TaxId: 1590 ],	SCOPe (2.08)
E	d1jkve_	All alpha proteins	Ferritin-like	Ferritin-like	Manganese catalase (T-catalase)	Manganese catalase (T-catalase)	(Lactiplantibacillus plantarum ) [TaxId: 1590 ],	SCOPe (2.08)
D	d1jkvd_	All alpha proteins	Ferritin-like	Ferritin-like	Manganese catalase (T-catalase)	Manganese catalase (T-catalase)	(Lactiplantibacillus plantarum ) [TaxId: 1590 ],	SCOPe (2.08)
C	d1jkvc_	All alpha proteins	Ferritin-like	Ferritin-like	Manganese catalase (T-catalase)	Manganese catalase (T-catalase)	(Lactiplantibacillus plantarum ) [TaxId: 1590 ],	SCOPe (2.08)
B	d1jkvb_	All alpha proteins	Ferritin-like	Ferritin-like	Manganese catalase (T-catalase)	Manganese catalase (T-catalase)	(Lactiplantibacillus plantarum ) [TaxId: 1590 ],	SCOPe (2.08)
A	d1jkva_	All alpha proteins	Ferritin-like	Ferritin-like	Manganese catalase (T-catalase)	Manganese catalase (T-catalase)	(Lactiplantibacillus plantarum ) [TaxId: 1590 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Ferritin-like	8037346	3001658	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ferritin-like	8037346	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8037346	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8037346	3001658	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8037346	3001658	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ferritin-like	8037346	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F		e1jkvF1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
E		e1jkvE1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
D		e1jkvD1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
C		e1jkvC1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
B		e1jkvB1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F:	ECOD (v294.1)
A	Rubrerythrin	e1jkvA1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Rubrerythrin	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
F	3.30.1530.10	Alpha Beta	2-Layer Sandwich	manganese catalase, domain 2, chain A	manganese catalase, domain 2, chain A	CATH (4.3.0)
E	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
E	3.30.1530.10	Alpha Beta	2-Layer Sandwich	manganese catalase, domain 2, chain A	manganese catalase, domain 2, chain A	CATH (4.3.0)
D	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
D	3.30.1530.10	Alpha Beta	2-Layer Sandwich	manganese catalase, domain 2, chain A	manganese catalase, domain 2, chain A	CATH (4.3.0)
C	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
C	3.30.1530.10	Alpha Beta	2-Layer Sandwich	manganese catalase, domain 2, chain A	manganese catalase, domain 2, chain A	CATH (4.3.0)
B	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
B	3.30.1530.10	Alpha Beta	2-Layer Sandwich	manganese catalase, domain 2, chain A	manganese catalase, domain 2, chain A	CATH (4.3.0)
A	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
A	3.30.1530.10	Alpha Beta	2-Layer Sandwich	manganese catalase, domain 2, chain A	manganese catalase, domain 2, chain A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	pseudocatalase	peroxidase activity oxidoreductase activity antioxidant activity catalase activity oxidoreductase activity, acting on peroxide as acceptor catalytic activity cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR027407	Manganese catalase, C-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR039377	Manganese catalase, ferritin-like di-iron-binding domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR012347	Ferritin-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR007760	Manganese catalase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.