1JKV | pdb_00001jkv

Crystal Structure of Manganese Catalase from Lactobacillus plantarum complexed with azide

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d1jkvf_	All alpha proteins	Ferritin-like	Ferritin-like	Manganese catalase (T-catalase)	Manganese catalase (T-catalase)	(Lactiplantibacillus plantarum ) [TaxId: 1590 ],	SCOPe (2.08)
E	d1jkve_	All alpha proteins	Ferritin-like	Ferritin-like	Manganese catalase (T-catalase)	Manganese catalase (T-catalase)	(Lactiplantibacillus plantarum ) [TaxId: 1590 ],	SCOPe (2.08)
D	d1jkvd_	All alpha proteins	Ferritin-like	Ferritin-like	Manganese catalase (T-catalase)	Manganese catalase (T-catalase)	(Lactiplantibacillus plantarum ) [TaxId: 1590 ],	SCOPe (2.08)
C	d1jkvc_	All alpha proteins	Ferritin-like	Ferritin-like	Manganese catalase (T-catalase)	Manganese catalase (T-catalase)	(Lactiplantibacillus plantarum ) [TaxId: 1590 ],	SCOPe (2.08)
B	d1jkvb_	All alpha proteins	Ferritin-like	Ferritin-like	Manganese catalase (T-catalase)	Manganese catalase (T-catalase)	(Lactiplantibacillus plantarum ) [TaxId: 1590 ],	SCOPe (2.08)
A	d1jkva_	All alpha proteins	Ferritin-like	Ferritin-like	Manganese catalase (T-catalase)	Manganese catalase (T-catalase)	(Lactiplantibacillus plantarum ) [TaxId: 1590 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Ferritin-like	8037346	3001658	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ferritin-like	8037346	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8037346	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8037346	3001658	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8037346	3001658	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ferritin-like	8037346	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Cation_efflux	e1jkvF1	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Cation_efflux	ECOD (v295.2)
E	Cation_efflux	e1jkvE1	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Cation_efflux	ECOD (v295.2)
D	Cation_efflux	e1jkvD1	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Cation_efflux	ECOD (v295.2)
C	Cation_efflux	e1jkvC1	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Cation_efflux	ECOD (v295.2)
B	Cation_efflux	e1jkvB1	A: alpha arrays	X: Urease, gamma-subunit	H: p53 tetramerization domain	T: p53 tetramerization domain	F: Cation_efflux	ECOD (v295.2)
A	Rubrerythrin	e1jkvA1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Rubrerythrin	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
F	3.30.1530.10	Alpha Beta	2-Layer Sandwich	manganese catalase, domain 2, chain A	manganese catalase, domain 2, chain A	CATH (4.3.0)
E	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
E	3.30.1530.10	Alpha Beta	2-Layer Sandwich	manganese catalase, domain 2, chain A	manganese catalase, domain 2, chain A	CATH (4.3.0)
D	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
D	3.30.1530.10	Alpha Beta	2-Layer Sandwich	manganese catalase, domain 2, chain A	manganese catalase, domain 2, chain A	CATH (4.3.0)
C	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
C	3.30.1530.10	Alpha Beta	2-Layer Sandwich	manganese catalase, domain 2, chain A	manganese catalase, domain 2, chain A	CATH (4.3.0)
B	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
B	3.30.1530.10	Alpha Beta	2-Layer Sandwich	manganese catalase, domain 2, chain A	manganese catalase, domain 2, chain A	CATH (4.3.0)
A	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
A	3.30.1530.10	Alpha Beta	2-Layer Sandwich	manganese catalase, domain 2, chain A	manganese catalase, domain 2, chain A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	pseudocatalase	peroxidase activity oxidoreductase activity antioxidant activity catalase activity oxidoreductase activity, acting on peroxide as acceptor catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR027407	Manganese catalase, C-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR039377	Manganese catalase, ferritin-like di-iron-binding domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR012347	Ferritin-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR007760	Manganese catalase	Family