1HY5

CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF YOPE-YERSINIA PESTIS GAP EFFECTOR PROTEIN.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1hy5a_	All alpha proteins	Four-helical up-and-down bundle	Bacterial GAP domain	Bacterial GAP domain	YopE	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)
B	d1hy5b1	All alpha proteins	Four-helical up-and-down bundle	Bacterial GAP domain	Bacterial GAP domain	YopE	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)
B	d1hy5b2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Yersinia pestis ) [TaxId: 632 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Bacterial GAP domain	8024176	4000836	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Bacterial GAP domain	8036555	3001649	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Bacterial GAP domain	8036555	3001649	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF03545,PF09020	e1hy5A1	A: alpha bundles	X: Four-helical up-and-down bundle	H: Bacterial GAP domain (From Topology)	T: Bacterial GAP domain	F: PF03545,PF09020	ECOD (1.6)
B	PF03545,PF09020	e1hy5B1	A: alpha bundles	X: Four-helical up-and-down bundle	H: Bacterial GAP domain (From Topology)	T: Bacterial GAP domain	F: PF03545,PF09020	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.120.260	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Virulence factor YopE uncharacterised domain	CATH (4.3.0)
B	1.20.120.260	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Virulence factor YopE uncharacterised domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF09020	YopE, N terminal (YopE_N)	YopE, N terminal	The N terminal YopE domain targets YopE for secretion from the bacterium and translocation into eukaryotic cells [1].	Domain
A, B	PF03545	Yersinia virulence determinant (YopE) (YopE)	Yersinia virulence determinant (YopE)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	YERSINIA PESTIS VIRULENCE PROTEIN YOPE	GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity	regulation of localization import into cell regulation of cellular process regulation of cellular component organization transport negative regulation of biological process negative regulation of transport negative regulation of endocytosis vesicle-mediated transport cellular component organization localization negative regulation of phagocytosis negative regulation of cellular process phagocytosis regulation of localization import into cell regulation of cellular process regulation of cellular component organization transport negative regulation of biological process negative regulation of transport negative regulation of endocytosis vesicle-mediated transport cellular component organization localization negative regulation of phagocytosis negative regulation of cellular process phagocytosis cellular component organization or biogenesis regulation of endocytosis regulation of biological process negative regulation of cellular component organization regulation of transport biological regulation regulation of phagocytosis regulation of vesicle-mediated transport establishment of localization cellular process endocytosis	cell periphery cell outer membrane external encapsulating structure membrane cell envelope outer membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR014773	Virulence factor YopE, GAP domain	Domain
A, B	IPR015110	YopE, N-terminal domain	Domain
A, B	IPR003537	Type III secretion system effector protein YopE-like	Family
A, B	IPR037168	Virulence factor YopE, GAP domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.