1HQZ | pdb_00001hqz

Cofilin homology domain of a yeast actin-binding protein ABP1P

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth 1]	d1hqz1_	Alpha and beta proteins (a+b)	Gelsolin-like	Actin depolymerizing proteins	Cofilin-like	Cofilin-like domain of actin-binding protein abp1p	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
B [auth 2]	d1hqz2_	Alpha and beta proteins (a+b)	Gelsolin-like	Actin depolymerizing proteins	Cofilin-like	Cofilin-like domain of actin-binding protein abp1p	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
C [auth 3]	d1hqz3_	Alpha and beta proteins (a+b)	Gelsolin-like	Actin depolymerizing proteins	Cofilin-like	Cofilin-like domain of actin-binding protein abp1p	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
G [auth 7]	d1hqz7_	Alpha and beta proteins (a+b)	Gelsolin-like	Actin depolymerizing proteins	Cofilin-like	Cofilin-like domain of actin-binding protein abp1p	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
I [auth 9]	d1hqz9_	Alpha and beta proteins (a+b)	Gelsolin-like	Actin depolymerizing proteins	Cofilin-like	Cofilin-like domain of actin-binding protein abp1p	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
H [auth 8]	d1hqz8_	Alpha and beta proteins (a+b)	Gelsolin-like	Actin depolymerizing proteins	Cofilin-like	Cofilin-like domain of actin-binding protein abp1p	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
F [auth 6]	d1hqz6_	Alpha and beta proteins (a+b)	Gelsolin-like	Actin depolymerizing proteins	Cofilin-like	Cofilin-like domain of actin-binding protein abp1p	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
E [auth 5]	d1hqz5_	Alpha and beta proteins (a+b)	Gelsolin-like	Actin depolymerizing proteins	Cofilin-like	Cofilin-like domain of actin-binding protein abp1p	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)
D [auth 4]	d1hqz4_	Alpha and beta proteins (a+b)	Gelsolin-like	Actin depolymerizing proteins	Cofilin-like	Cofilin-like domain of actin-binding protein abp1p	baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth 1]	SCOP2 Family	Cofilin-like	8024138	4001833	SCOP2 (2022-06-29)
A [auth 1]	SCOP2 Superfamily	Actin depolymerizing proteins	8036517	3000430	SCOP2 (2022-06-29)
B [auth 2]	SCOP2B Superfamily	Actin depolymerizing proteins	8036517	3000430	SCOP2B (2022-06-29)
C [auth 3]	SCOP2B Superfamily	Actin depolymerizing proteins	8036517	3000430	SCOP2B (2022-06-29)
G [auth 7]	SCOP2B Superfamily	Actin depolymerizing proteins	8036517	3000430	SCOP2B (2022-06-29)
I [auth 9]	SCOP2B Superfamily	Actin depolymerizing proteins	8036517	3000430	SCOP2B (2022-06-29)
H [auth 8]	SCOP2B Superfamily	Actin depolymerizing proteins	8036517	3000430	SCOP2B (2022-06-29)
F [auth 6]	SCOP2B Superfamily	Actin depolymerizing proteins	8036517	3000430	SCOP2B (2022-06-29)
E [auth 5]	SCOP2B Superfamily	Actin depolymerizing proteins	8036517	3000430	SCOP2B (2022-06-29)
D [auth 4]	SCOP2B Superfamily	Actin depolymerizing proteins	8036517	3000430	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth 1]	Gelsolin	e1hqz11	A: a+b three layers	X: Gelsolin-like	H: Gelsolin-like	T: Gelsolin-like	F: Gelsolin	ECOD (v294.1)
B [auth 2]	NTP_transf_2, PAP_NTPase	e1hqz21	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: NTP_transf_2, PAP_NTPase	ECOD (v294.1)
C [auth 3]	NTP_transf_2, PAP_NTPase	e1hqz31	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: NTP_transf_2, PAP_NTPase	ECOD (v294.1)
G [auth 7]	NTP_transf_2, PAP_NTPase	e1hqz71	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: NTP_transf_2, PAP_NTPase	ECOD (v294.1)
I [auth 9]	NTP_transf_2, PAP_NTPase	e1hqz91	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: NTP_transf_2, PAP_NTPase	ECOD (v294.1)
H [auth 8]	NTP_transf_2, PAP_NTPase	e1hqz81	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: NTP_transf_2, PAP_NTPase	ECOD (v294.1)
F [auth 6]	NTP_transf_2, PAP_NTPase	e1hqz61	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: NTP_transf_2, PAP_NTPase	ECOD (v294.1)
E [auth 5]	NTP_transf_2, PAP_NTPase	e1hqz51	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: NTP_transf_2, PAP_NTPase	ECOD (v294.1)
D [auth 4]	NTP_transf_2, PAP_NTPase	e1hqz41	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: NTP_transf_2, PAP_NTPase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth 1]	3.40.20.10	Alpha Beta	3-Layer(aba) Sandwich	Severin	Severin	CATH (4.3.0)
B [auth 2]	3.40.20.10	Alpha Beta	3-Layer(aba) Sandwich	Severin	Severin	CATH (4.3.0)
C [auth 3]	3.40.20.10	Alpha Beta	3-Layer(aba) Sandwich	Severin	Severin	CATH (4.3.0)
G [auth 7]	3.40.20.10	Alpha Beta	3-Layer(aba) Sandwich	Severin	Severin	CATH (4.3.0)
I [auth 9]	3.40.20.10	Alpha Beta	3-Layer(aba) Sandwich	Severin	Severin	CATH (4.3.0)
H [auth 8]	3.40.20.10	Alpha Beta	3-Layer(aba) Sandwich	Severin	Severin	CATH (4.3.0)
F [auth 6]	3.40.20.10	Alpha Beta	3-Layer(aba) Sandwich	Severin	Severin	CATH (4.3.0)
E [auth 5]	3.40.20.10	Alpha Beta	3-Layer(aba) Sandwich	Severin	Severin	CATH (4.3.0)
D [auth 4]	3.40.20.10	Alpha Beta	3-Layer(aba) Sandwich	Severin	Severin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], F [auth 6], G [auth 7], H [auth 8], I [auth 9]	PF00241	Cofilin/tropomyosin-type actin-binding protein (Cofilin_ADF)	Cofilin/tropomyosin-type actin-binding protein	Severs actin filaments and binds to actin monomers.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], F [auth 6], G [auth 7], H [auth 8], I [auth 9]	ACTIN-BINDING PROTEIN	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding	positive regulation of organelle organization regulation of Arp2/3 complex-mediated actin nucleation regulation of cytoskeleton organization regulation of cellular component organization regulation of cellular process regulation of actin filament-based process positive regulation of cellular component organization positive regulation of Arp2/3 complex-mediated actin nucleation positive regulation of biological process cellular component organization regulation of actin nucleation actin filament-based process cellular component organization or biogenesis positive regulation of cellular process positive regulation of organelle organization regulation of Arp2/3 complex-mediated actin nucleation regulation of cytoskeleton organization regulation of cellular component organization regulation of cellular process regulation of actin filament-based process positive regulation of cellular component organization positive regulation of Arp2/3 complex-mediated actin nucleation positive regulation of biological process cellular component organization regulation of actin nucleation actin filament-based process cellular component organization or biogenesis positive regulation of cellular process regulation of biological process regulation of actin filament organization actin cytoskeleton organization positive regulation of cytoskeleton organization actin filament organization biological regulation Arp2/3 complex-mediated actin nucleation positive regulation of supramolecular fiber organization regulation of organelle organization organelle organization positive regulation of actin nucleation regulation of actin cytoskeleton organization regulation of supramolecular fiber organization cellular process actin nucleation supramolecular fiber organization cytoskeleton organization actin cortical patch organization cortical cytoskeleton organization actin cortical patch assembly cellular component biogenesis cellular component assembly cortical actin cytoskeleton organization localization protein localization to cell periphery protein localization to actin cortical patch protein localization to actin cytoskeleton macromolecule localization protein localization to cytoskeleton protein localization to organelle intracellular protein localization protein localization to cell cortex regulation of cellular component size negative regulation of biological process protein-containing complex disassembly regulation of protein-containing complex disassembly actin filament depolymerization regulation of actin filament depolymerization actin filament capping regulation of biological quality negative regulation of supramolecular fiber organization negative regulation of actin filament polymerization cellular component disassembly barbed-end actin filament capping negative regulation of cellular component organization negative regulation of protein depolymerization negative regulation of protein-containing complex assembly regulation of protein polymerization regulation of protein-containing complex assembly negative regulation of protein-containing complex disassembly negative regulation of cellular process protein-containing complex assembly negative regulation of protein polymerization regulation of actin filament polymerization actin polymerization or depolymerization protein polymerization actin filament polymerization protein-containing complex organization regulation of protein depolymerization negative regulation of cytoskeleton organization regulation of actin polymerization or depolymerization regulation of cellular component biogenesis negative regulation of organelle organization regulation of actin filament length negative regulation of actin filament depolymerization protein depolymerization regulation of anatomical structure size	cell cortex intracellular anatomical structure cortical cytoskeleton intracellular membraneless organelle actin cytoskeleton cell periphery intracellular organelle endocytic patch cellular anatomical structure cytoskeleton organelle membraneless organelle cortical actin cytoskeleton actin cortical patch cell cortex intracellular anatomical structure cortical cytoskeleton intracellular membraneless organelle actin cytoskeleton cell periphery intracellular organelle endocytic patch cellular anatomical structure cytoskeleton organelle membraneless organelle cortical actin cytoskeleton actin cortical patch cytoplasm site of polarized growth cell projection mating projection cell tip mating projection tip cell pole plasma membrane bounded cell projection

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], F [auth 6], G [auth 7], H [auth 8], I [auth 9]	IPR029006	ADF-H/Gelsolin-like domain superfamily	Homologous Superfamily
A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], F [auth 6], G [auth 7], H [auth 8], I [auth 9]	IPR001452	SH3 domain	Domain
A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], F [auth 6], G [auth 7], H [auth 8], I [auth 9]	IPR036028	SH3-like domain superfamily	Homologous Superfamily
A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], F [auth 6], G [auth 7], H [auth 8], I [auth 9]	IPR035718	Fungal actin-binding protein 1, second SH3 domain	Domain
A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], F [auth 6], G [auth 7], H [auth 8], I [auth 9]	IPR002108	Actin-depolymerising factor homology domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.