1HM3 | pdb_00001hm3

ACTIVE SITE OF CHONDROITINASE AC LYASE REVEALED BY THE STRUCTURE OF ENZYME-OLIGOSACCHARIDE COMPLEXES AND MUTAGENESIS

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1hm3a1	All alpha proteins	alpha/alpha toroid	Chondroitin AC/alginate lyase	Hyaluronate lyase-like catalytic, N-terminal domain	Chondroitinase AC	(Pedobacter heparinus ) [TaxId: 984 ],	SCOPe (2.08)
A	d1hm3a2	All beta proteins	Hyaluronate lyase-like, C-terminal domain	Hyaluronate lyase-like, C-terminal domain	Hyaluronate lyase-like, C-terminal domain	Chondroitinase AC	(Pedobacter heparinus ) [TaxId: 984 ],	SCOPe (2.08)
A	d1hm3a3	All beta proteins	Supersandwich	Galactose mutarotase-like	Hyaluronate lyase-like, central domain	Chondroitinase AC	(Pedobacter heparinus ) [TaxId: 984 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Hyaluronate lyase-like, C-terminal domain	8041256	3001435	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Chondroitin AC/alginate lyase	8038387	3001005	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Galactose mutarotase-like	8041536	3000035	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Crystall	e1hm3A1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Crystall	ECOD (develop294)
A	Ank+Ank_2+Ank_4	e1hm3A3	A: alpha bundles	X: EGF-like	H: Ankyrin repeat	T: Ankyrin repeat	F: Ank+Ank_2+Ank_4	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.50.10.100	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase	Chondroitin AC/alginate lyase	CATH (4.3.0)
A	2.70.98.10	Mainly Beta	Distorted Sandwich	Beta-galactosidase	Chain A, domain 5	CATH (4.3.0)
A	2.60.220.10	Mainly Beta	Sandwich	Chondroitinase Ac	Chain A, domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF02278	Polysaccharide lyase family 8, super-sandwich domain (Lyase_8)	Polysaccharide lyase family 8, super-sandwich domain	This family consists of a group of secreted bacterial lyase enzymes EC:4.2.2.1 capable of acting on hyaluronan and chondroitin in the extracellular matrix of host tissues, contributing to the invasive capacity of the pathogen.	Domain
A	PF02884	Polysaccharide lyase family 8, C-terminal beta-sandwich domain (Lyase_8_C)	Polysaccharide lyase family 8, C-terminal beta-sandwich domain	This family consists of a group of secreted bacterial lyase enzymes EC:4.2.2.1 capable of acting on hyaluronan and chondroitin in the extracellular matrix of host tissues, contributing to the invasive capacity of the pathogen.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	CHONDROITINASE AC	binding carbohydrate binding lyase activity carbon-oxygen lyase activity, acting on polysaccharides catalytic activity carbon-oxygen lyase activity chondroitin AC lyase activity cation binding ion binding metal ion binding small molecule binding	carbohydrate metabolic process primary metabolic process metabolic process cellular process	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR011071	Polysaccharide lyase family 8-like, C-terminal	Homologous Superfamily
A	IPR054982	Chondroitinase-AC	Family
A	IPR012970	Polysaccharide lyase 8, N-terminal alpha-helical	Domain
A	IPR004103	Polysaccharide lyase family 8, C-terminal	Domain
A	IPR038970	Polysaccharide lyase 8	Family
A	IPR003159	Polysaccharide lyase family 8, central domain	Domain
A	IPR008929	Chondroitin AC/alginate lyase	Homologous Superfamily
A	IPR014718	Glycoside hydrolase-type carbohydrate-binding	Homologous Superfamily
A	IPR011013	Galactose mutarotase-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.