Skip to main content

 1H5W | pdb_00001h5w

2.1A Bacteriophage Phi-29 Connector

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Cd1h5wc_ Multi-domain proteins (alpha and beta) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) (Salasvirus phi29 ) [TaxId: 10756 ], SCOPe (2.08)
Bd1h5wb_ Multi-domain proteins (alpha and beta) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) (Salasvirus phi29 ) [TaxId: 10756 ], SCOPe (2.08)
Ad1h5wa_ Multi-domain proteins (alpha and beta) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) Upper collar protein gp10 (connector protein) (Salasvirus phi29 ) [TaxId: 10756 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyUpper collar protein gp10 (connector protein) 8036294 3001932 SCOP2B (2022-06-29)
BSCOP2 FamilyUpper collar protein gp10 (connector protein) 8023915 4002952 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyUpper collar protein gp10 (connector protein) 8036294 3001932 SCOP2 (2022-06-29)
ASCOP2B SuperfamilyUpper collar protein gp10 (connector protein) 8036294 3001932 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CDUF1684e1h5wC1 A: alpha arraysX: Alpha-beta plaitsH: Phage tail protein-likeT: Transmembrane protein 14AF: DUF1684ECOD (v295.2)
BDUF1684e1h5wB1 A: alpha arraysX: Alpha-beta plaitsH: Phage tail protein-likeT: Transmembrane protein 14AF: DUF1684ECOD (v295.2)
APDZe1h5wA3 A: alpha arraysX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsH: Nucleoplasmin-like/VP (viral coat and capsid proteins)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PDZECOD (v295.2)
ABPD_transp_1e1h5wA4 A: alpha arraysX: Hormone receptor domain (HRM, Pfam 02793)H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainT: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domainF: BPD_transp_1ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C1.10.246.30 Mainly Alpha Orthogonal Bundle Serum Albumin Chain A, Domain 1CATH (4.3.0)
C2.40.500.10 Mainly Beta Beta Barrel Upper collar protein gp10 (connector protein) fold Upper collar protein gp10 (connector protein)CATH (4.3.0)
C3.30.1350.20 Alpha Beta 2-Layer Sandwich Crambin Bacteriophage PHI-29 conector. Domain 3CATH (4.3.0)
B1.10.246.30 Mainly Alpha Orthogonal Bundle Serum Albumin Chain A, Domain 1CATH (4.3.0)
B2.40.500.10 Mainly Beta Beta Barrel Upper collar protein gp10 (connector protein) fold Upper collar protein gp10 (connector protein)CATH (4.3.0)
B3.30.1350.20 Alpha Beta 2-Layer Sandwich Crambin Bacteriophage PHI-29 conector. Domain 3CATH (4.3.0)
A1.10.246.30 Mainly Alpha Orthogonal Bundle Serum Albumin Chain A, Domain 1CATH (4.3.0)
A2.40.500.10 Mainly Beta Beta Barrel Upper collar protein gp10 (connector protein) fold Upper collar protein gp10 (connector protein)CATH (4.3.0)
A3.30.1350.20 Alpha Beta 2-Layer Sandwich Crambin Bacteriophage PHI-29 conector. Domain 3CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
UPPER COLLAR PROTEIN

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR008016Portal protein Gp10Family
A, B, C
IPR036199Portal protein Gp10 superfamilyHomologous Superfamily