1H29 | pdb_00001h29

Sulfate respiration in Desulfovibrio vulgaris Hildenborough: Structure of the 16-heme Cytochrome c HmcA at 2.5 A resolution and a view of its role in transmembrane electron transfer


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyCytochrome c3-like 8090738 3002451 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCytochrome c3-like 8039354 3002451 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCytochrome c3-like 8090740 3002451 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCytochrome c3-like 8090739 3002451 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCytochrome c3-like 8090739 3002451 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCytochrome c3-like 8090738 3002451 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCytochrome c3-like 8039354 3002451 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCytochrome c3-like 8090740 3002451 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCytochrome c3-like 8090738 3002451 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCytochrome c3-like 8039354 3002451 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCytochrome c3-like 8090740 3002451 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCytochrome c3-like 8090739 3002451 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCytochrome c3-like 8090738 3002451 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCytochrome c3-like 8090739 3002451 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCytochrome c3-like 8090740 3002451 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCytochrome c3-like 8039354 3002451 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DCytochrom_CIIIe1h29D2 A: few secondary structure elementsX: Multiheme cytochromesH: Cytochrome c3-like (From Topology)T: Cytochrome c3-likeF: Cytochrom_CIIIECOD (1.6)
CCytochrom_CIIIe1h29C1 A: few secondary structure elementsX: Multiheme cytochromesH: Cytochrome c3-like (From Topology)T: Cytochrome c3-likeF: Cytochrom_CIIIECOD (1.6)
BCytochrom_CIIIe1h29B1 A: few secondary structure elementsX: Multiheme cytochromesH: Cytochrome c3-like (From Topology)T: Cytochrome c3-likeF: Cytochrom_CIIIECOD (1.6)
ACytochrom_CIIIe1h29A1 A: few secondary structure elementsX: Multiheme cytochromesH: Cytochrome c3-like (From Topology)T: Cytochrome c3-likeF: Cytochrom_CIIIECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.90.10.10 Alpha Beta Alpha-Beta Complex Cytochrome C3 Cytochrome C3CATH (4.3.0)
C3.90.10.10 Alpha Beta Alpha-Beta Complex Cytochrome C3 Cytochrome C3CATH (4.3.0)
B3.90.10.10 Alpha Beta Alpha-Beta Complex Cytochrome C3 Cytochrome C3CATH (4.3.0)
A3.90.10.10 Alpha Beta Alpha-Beta Complex Cytochrome C3 Cytochrome C3CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF22113Outer membrane cytochrome MtrC/MtrF-like, domains II/IV (Mtrc-MtrF_II-IV_dom)Outer membrane cytochrome MtrC/MtrF-like, domains II/IVThis entry includes decaheme cytochrome c component MtrC from the MtrCAB complex and its homologues MtrF (which is part of the MtrFDE complex) and OmcA. In Shewanella oneidensis, these proteins are located at the bacterial cell surface at the termini ...This entry includes decaheme cytochrome c component MtrC from the MtrCAB complex and its homologues MtrF (which is part of the MtrFDE complex) and OmcA. In Shewanella oneidensis, these proteins are located at the bacterial cell surface at the termini of trans-outer-membrane electron transfer conduits and allow the utilization of extracellular mineral forms of iron and manganese as respiratory electron acceptors [5,6]. MtrC/MtrF/OmcA consist of four domains: domain I and III containing seven antiparallel beta-strands in an extended Greek key topology; domains II and IV each bind five tightly packed hemes covalently attached to the Cys residues of the five CXXCH motifs in each domain and form the central core, flanked by domains I (Pfam:PF22111) and III [5,6]. This entry represents domains II and IV.
Domain
A, B, C, D
PF02085Class III cytochrome C family (Cytochrom_CIII)Class III cytochrome C familyDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage