1GKU
Reverse gyrase from Archaeoglobus fulgidus
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d1gkub1 | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | Helicase-like domain of reverse gyrase | Helicase-like domain of reverse gyrase | (Archaeoglobus fulgidus DSM 4304 ) [TaxId: 224325 ], | SCOPe (2.08) |
A [auth B] | d1gkub3 | Multi-domain proteins (alpha and beta) | Prokaryotic type I DNA topoisomerase | Prokaryotic type I DNA topoisomerase | Prokaryotic type I DNA topoisomerase | Topoisomerase 'domain' of reverse gyrase | (Archaeoglobus fulgidus DSM 4304 ) [TaxId: 224325 ], | SCOPe (2.08) |
A [auth B] | d1gkub4 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Archaeoglobus fulgidus DSM 4304 ) [TaxId: 224325 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2 Family | Prokaryotic type I DNA topoisomerase clamp domain-like | 8023537 | 4002819 | SCOP2 (2022-06-29) |
A [auth B] | SCOP2 Family | Tandem AAA-ATPase domain | 8023534 | 4000282 | SCOP2 (2022-06-29) |
A [auth B] | SCOP2 Family | Prokaryotic type I DNA topoisomerase N-terminal domain-like | 8055740 | 4007652 | SCOP2 (2022-06-29) |
A [auth B] | SCOP2 Superfamily | Prokaryotic type I DNA topoisomerase clamp domain-like | 8035917 | 3001789 | SCOP2 (2022-06-29) |
A [auth B] | SCOP2 Superfamily | RecA-like P-loop NTPases | 8035914 | 3002019 | SCOP2 (2022-06-29) |
A [auth B] | SCOP2 Superfamily | RecA-like P-loop NTPases | 8035915 | 3002019 | SCOP2 (2022-06-29) |
A [auth B] | SCOP2 Superfamily | Toprim domain-like | 8055741 | 3000737 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PRK14701 | e1gkuB6 | A: beta barrels | X: LigT-like | H: Prokaryotic type I DNA topoisomerase beta-barrel domain (From Topology) | T: Prokaryotic type I DNA topoisomerase beta-barrel domain | F: PRK14701 | ECOD (1.6) |
A [auth B] | Topoisom_bac_3rd | e1gkuB5 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Topoisom_bac_3rd | ECOD (1.6) |
A [auth B] | Topoisom_bac_1st | e1gkuB4 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Topoisom_bac_1st | ECOD (1.6) |
A [auth B] | DEAD_3 | e1gkuB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: DEAD_3 | ECOD (1.6) |
A [auth B] | UNK_F_TYPE | e1gkuB2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: UNK_F_TYPE | ECOD (1.6) |
A [auth B] | Toprim | e1gkuB3 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Toprim domain | F: Toprim | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 2.20.20.30 | Mainly Beta | Single Sheet | Anthopleurin-A | reverse gyrase domain | CATH (4.3.0) |
A [auth B] | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
A [auth B] | 3.30.56.120 | Alpha Beta | 2-Layer Sandwich | Phenylalanyl-tRNA Synthetase | Chain B, domain 1 | CATH (4.3.0) |
A [auth B] | 3.40.50.140 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
A [auth B] | 1.10.460.10 | Mainly Alpha | Orthogonal Bundle | Topoisomerase I | domain 2 | CATH (4.3.0) |
A [auth B] | 2.60.510.20 | Mainly Beta | Sandwich | EV matrix protein fold | CATH (4.3.0) | |
A [auth B] | 1.10.290.10 | Mainly Alpha | Orthogonal Bundle | Topoisomerase I | domain 4 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B] | PF00270 | DEAD/DEAH box helicase (DEAD) | DEAD/DEAH box helicase | Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ... | Domain |
A [auth B] | PF01131 | DNA topoisomerase (Topoisom_bac) | DNA topoisomerase | - | Family |
A [auth B] | PF01751 | Toprim domain (Toprim) | Toprim domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B] | IPR013497 | DNA topoisomerase, type IA, central | Domain |
A [auth B] | IPR003602 | DNA topoisomerase, type IA, DNA-binding domain | Domain |
A [auth B] | IPR023405 | DNA topoisomerase, type IA, core domain | Homologous Superfamily |
A [auth B] | IPR014001 | Helicase superfamily 1/2, ATP-binding domain | Domain |
A [auth B] | IPR005736 | Reverse gyrase | Family |
A [auth B] | IPR003601 | DNA topoisomerase, type IA, domain 2 | Domain |
A [auth B] | IPR013826 | DNA topoisomerase, type IA, central region, subdomain 3 | Homologous Superfamily |
A [auth B] | IPR006171 | TOPRIM domain | Domain |
A [auth B] | IPR034142 | Reverse gyrase, TOPRIM domain | Domain |
A [auth B] | IPR011545 | DEAD/DEAH box helicase domain | Domain |
A [auth B] | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |
A [auth B] | IPR013824 | DNA topoisomerase, type IA, central region, subdomain 1 | Homologous Superfamily |