1FXD | pdb_00001fxd

REFINED CRYSTAL STRUCTURE OF FERREDOXIN II FROM DESULFOVIBRIO GIGAS AT 1.7 ANGSTROMS

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1fxda_ Alpha and beta proteins (a+b) Ferredoxin-like 4Fe-4S ferredoxins Single 4Fe-4S cluster ferredoxin Ferredoxin I (Megalodesulfovibrio gigas ) [TaxId: 879 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilySingle 4Fe-4S cluster ferredoxin 8022840 4001234 SCOP2 (2022-06-29)
ASCOP2 Superfamily4Fe-4S ferredoxins 8035220 3000020 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AFer4_13e1fxdA2 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_13ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.70.20 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
FERREDOXIN II - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
IPR0010803Fe-4S ferredoxinFamily
IPR051269Iron-sulfur cluster electron transportFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
SCH Parent Component: CYS

RESID:  AA0101

PSI-MOD :  L-cysteine methyl disulfide MOD:00110