Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
G [auth C]d1eg0c_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
H [auth D]d1eg0d_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
J [auth F]d1eg0f_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
K [auth G]d1eg0g_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
L [auth H]d1eg0h_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
M [auth N]d1eg0n_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
N [auth J]d1eg0j_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
O [auth K]d1eg0k_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
E [auth A]d1eg0a1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
E [auth A]d1eg0a2 Artifacts Tags Tags Tags N-terminal Tags (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
F [auth B]d1eg0b_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
I [auth E]d1eg0e_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
H [auth D]SCOP2B SuperfamilyRibosomal protein S78033523 3000799 SCOP2B (2022-06-29)
K [auth G]SCOP2B SuperfamilyNucleic acid-binding proteins8041956 3000135 SCOP2B (2022-06-29)
O [auth K]SCOP2B SuperfamilyRibosomal protein L11 C-terminal domain8036651 3001186 SCOP2B (2022-06-29)
O [auth K]SCOP2B SuperfamilyRibosomal L11/L12e N-terminal domain-like8035082 3000950 SCOP2B (2022-06-29)
E [auth A]SCOP2B SuperfamilyAlpha-L RNA-binding motif8083390 3001473 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
G [auth C]PF01250e1eg0C1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: PF01250ECOD (1.6)
H [auth D]PF00177e1eg0D1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
J [auth F]PF00312e1eg0F1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
K [auth G]PF00366e1eg0G1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366ECOD (1.6)
M [auth N]PF00687e1eg0N1 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: PF00687ECOD (1.6)
M [auth N]PF00687e1eg0N2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: PF00687ECOD (1.6)
N [auth J]PF00347e1eg0J1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
O [auth K]PF00298e1eg0K1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
O [auth K]PF03946e1eg0K2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
E [auth A]PF00163,PF01479e1eg0A1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
F [auth B]PF03719e1eg0B2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
F [auth B]PF00333e1eg0B1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
I [auth E]PF00410e1eg0E1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
I [auth E]PF00410e1eg0E2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
G [auth C]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
H [auth D]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
J [auth F]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
K [auth G]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
M [auth N]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
N [auth J]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
O [auth K]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
O [auth K]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
E [auth A]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
E [auth A]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
F [auth B]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
F [auth B]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
I [auth E]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth O]FORMYL-METHIONYL-TRNA---
G [auth C]PROTEIN (S6 RIBOSOMAL PROTEIN)
H [auth D]PROTEIN (S7 RIBOSOMAL PROTEIN)
J [auth F]PROTEIN (S15 RIBOSOMAL PROTEIN)
K [auth G]PROTEIN (S17 RIBOSOMAL PROTEIN)
L [auth H]PROTEIN (S20 RIBOSOMAL PROTEIN)---
M [auth N]PROTEIN (RIBOSOMAL PROTEIN L1)
N [auth J]PROTEIN (RIBOSOMAL PROTEIN L6)
A [auth I]FRAGMENT OF 16S RRNA HELIX 23---
O [auth K]PROTEIN (RIBOSOMAL PROTEIN L11)
B [auth L]FRAGMENT OF 23S RRNA---
C [auth M]HELIX 95 OF 23S RRNA---
E [auth A]PROTEIN (S4 RIBOSOMAL PROTEIN)
F [auth B]PROTEIN (S5 RIBOSOMAL PROTEIN)
I [auth E]PROTEIN (S8 RIBOSOMAL PROTEIN)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
G [auth C]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
G [auth C]IPR000529Small ribosomal subunit protein bS6Family
G [auth C]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
G [auth C]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
G [auth C]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
H [auth D]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
H [auth D]IPR000235Small ribosomal subunit protein uS7Family
H [auth D]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
H [auth D]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
H [auth D]IPR023798Small ribosomal subunit protein uS7 domainDomain
J [auth F]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
J [auth F]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
J [auth F]IPR000589Small ribosomal subunit protein uS15Family
K [auth G]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
K [auth G]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
K [auth G]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
K [auth G]IPR000266Small ribosomal subunit protein uS17Family
M [auth N]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
M [auth N]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
M [auth N]IPR005878Large ribosomal subunit protein uL1, bacterial-typeFamily
M [auth N]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
M [auth N]IPR002143Large ribosomal subunit protein uL1Family
M [auth N]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
N [auth J]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
N [auth J]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
N [auth J]IPR000702Large ribosomal subunit protein uL6-likeFamily
N [auth J]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
N [auth J]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
O [auth K]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
O [auth K]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
O [auth K]IPR000911Ribosomal protein uL11Family
O [auth K]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
O [auth K]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
O [auth K]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
O [auth K]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
E [auth A]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
E [auth A]IPR002942RNA-binding S4 domainDomain
E [auth A]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
E [auth A]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth A]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
E [auth A]IPR022801Small ribosomal subunit protein uS4Family
F [auth B]IPR000851Small ribosomal subunit protein uS5Family
F [auth B]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
F [auth B]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
F [auth B]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
F [auth B]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
F [auth B]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
F [auth B]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
I [auth E]IPR000630Small ribosomal subunit protein uS8Family
I [auth E]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
I [auth E]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily