1EDY | pdb_00001edy

CRYSTAL STRUCTURE OF RAT ALPHA 1-MACROGLOBULIN RECEPTOR BINDING DOMAIN

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1edyb_	All beta proteins	Immunoglobulin-like beta-sandwich	Macroglobulin	Alpha-macroglobulin receptor domain	alpha-1-macroglobulin	Norway rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
A	d1edya_	All beta proteins	Immunoglobulin-like beta-sandwich	Macroglobulin	Alpha-macroglobulin receptor domain	alpha-1-macroglobulin	Norway rat (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	alpha-macroglobulin receptor domain	8040211	3000742	SCOP2B (2022-06-29)
A	SCOP2 Family	alpha-macroglobulin receptor domain	8027832	4002046	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	alpha-macroglobulin receptor domain	8040211	3000742	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	CBM_2	e1edyB1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: CBM_2	ECOD (v294.1)
A	CBM_2	e1edyA1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: CBM_2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.40.690	Mainly Beta	Sandwich	Immunoglobulin-like	Alpha-macroglobulin, receptor-binding domain	CATH (4.3.0)
A	2.60.40.690	Mainly Beta	Sandwich	Immunoglobulin-like	Alpha-macroglobulin, receptor-binding domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF07677	A-macroglobulin receptor binding domain (A2M_recep)	A-macroglobulin receptor binding domain	This family includes the receptor binding domain region of the alpha-2-macroglobulin family.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	ALPHA 1-MACROGLOBULIN	enzyme regulator activity molecular function inhibitor activity peptidase regulator activity serine-type endopeptidase inhibitor activity molecular function regulator activity enzyme inhibitor activity peptidase inhibitor activity endopeptidase regulator activity endopeptidase inhibitor activity protein-containing complex binding binding neurotrophin binding brain-derived neurotrophic factor binding protein binding enzyme regulator activity molecular function inhibitor activity peptidase regulator activity serine-type endopeptidase inhibitor activity molecular function regulator activity enzyme inhibitor activity peptidase inhibitor activity endopeptidase regulator activity endopeptidase inhibitor activity protein-containing complex binding binding neurotrophin binding brain-derived neurotrophic factor binding protein binding growth factor binding enzyme binding protease binding nerve growth factor binding	developmental process multicellular organism development multicellular organismal process multi-multicellular organism process reproductive process anatomical structure development female pregnancy embryo implantation multi-organism reproductive process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR041813	Alpha-2-macroglobulin, TED domain	Domain
A, B	IPR019742	Alpha-2-macroglobulin, conserved site	Conserved Site
A, B	IPR009048	Alpha-macroglobulin, receptor-binding	Domain
A, B	IPR011625	Alpha-2-macroglobulin, bait region domain	Domain
A, B	IPR041555	Macroglobulin domain MG3	Domain
A, B	IPR011626	Alpha-macroglobulin-like, TED domain	Domain
A, B	IPR001599	Alpha-2-macroglobulin	Domain
A, B	IPR047565	Alpha-macroglobulin-like, thiol-ester bond-forming region	Conserved Site
A, B	IPR036595	Alpha-macroglobulin, receptor-binding domain superfamily	Homologous Superfamily
A, B	IPR002890	Macroglobulin domain	Domain
A, B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B	IPR050473	Alpha-2-macroglobulin/Complement system	Family
A, B	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A, B	IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	Homologous Superfamily
A, B	IPR040839	Macroglobulin domain MG4	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.