1DT0 | pdb_00001dt0

CLONING, SEQUENCE, AND CRYSTALLOGRAPHIC STRUCTURE OF RECOMBINANT IRON SUPEROXIDE DISMUTASE FROM PSEUDOMONAS OVALIS

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1dt0a1	All alpha proteins	Long alpha-hairpin	Fe,Mn superoxide dismutase (SOD), N-terminal domain	Fe,Mn superoxide dismutase (SOD), N-terminal domain	Fe superoxide dismutase (FeSOD)	(Pseudomonas putida ) [TaxId: 303 ],	SCOPe (2.08)
A	d1dt0a2	Alpha and beta proteins (a+b)	Fe,Mn superoxide dismutase (SOD), C-terminal domain	Fe,Mn superoxide dismutase (SOD), C-terminal domain	Fe,Mn superoxide dismutase (SOD), C-terminal domain	Fe superoxide dismutase (FeSOD)	(Pseudomonas putida ) [TaxId: 303 ],	SCOPe (2.08)
C	d1dt0c1	All alpha proteins	Long alpha-hairpin	Fe,Mn superoxide dismutase (SOD), N-terminal domain	Fe,Mn superoxide dismutase (SOD), N-terminal domain	Fe superoxide dismutase (FeSOD)	(Pseudomonas putida ) [TaxId: 303 ],	SCOPe (2.08)
C	d1dt0c2	Alpha and beta proteins (a+b)	Fe,Mn superoxide dismutase (SOD), C-terminal domain	Fe,Mn superoxide dismutase (SOD), C-terminal domain	Fe,Mn superoxide dismutase (SOD), C-terminal domain	Fe superoxide dismutase (FeSOD)	(Pseudomonas putida ) [TaxId: 303 ],	SCOPe (2.08)
B	d1dt0b1	All alpha proteins	Long alpha-hairpin	Fe,Mn superoxide dismutase (SOD), N-terminal domain	Fe,Mn superoxide dismutase (SOD), N-terminal domain	Fe superoxide dismutase (FeSOD)	(Pseudomonas putida ) [TaxId: 303 ],	SCOPe (2.08)
B	d1dt0b2	Alpha and beta proteins (a+b)	Fe,Mn superoxide dismutase (SOD), C-terminal domain	Fe,Mn superoxide dismutase (SOD), C-terminal domain	Fe,Mn superoxide dismutase (SOD), C-terminal domain	Fe superoxide dismutase (FeSOD)	(Pseudomonas putida ) [TaxId: 303 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Fe, Mn superoxide dismutase (SOD), C-terminal domain	8022676	4001146	SCOP2 (2022-06-29)
A	SCOP2 Family	Fe, Mn superoxide dismutase (SOD), N-terminal domain	8023949	4000630	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Fe, Mn superoxide dismutase (SOD), C-terminal domain	8035056	3000916	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Fe, Mn superoxide dismutase (SOD), N-terminal domain	8036328	3000794	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	Fe, Mn superoxide dismutase (SOD), C-terminal domain	8035056	3000916	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Fe, Mn superoxide dismutase (SOD), N-terminal domain	8036328	3000794	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Fe, Mn superoxide dismutase (SOD), C-terminal domain	8035056	3000916	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Fe, Mn superoxide dismutase (SOD), N-terminal domain	8036328	3000794	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Seryl_tRNA_N	e1dt0A1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: tRNA-binding arm	T: tRNA-binding arm	F: Seryl_tRNA_N	ECOD (v294.1)
A	NTP_transf_2, PAP_NTPase	e1dt0A2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: NTP_transf_2, PAP_NTPase	ECOD (v294.1)
C	Seryl_tRNA_N	e1dt0C1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: tRNA-binding arm	T: tRNA-binding arm	F: Seryl_tRNA_N	ECOD (v294.1)
C	NTP_transf_2, PAP_NTPase	e1dt0C2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: NTP_transf_2, PAP_NTPase	ECOD (v294.1)
B	Seryl_tRNA_N	e1dt0B1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: tRNA-binding arm	T: tRNA-binding arm	F: Seryl_tRNA_N	ECOD (v294.1)
B	NTP_transf_2, PAP_NTPase	e1dt0B2	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: ETN0001 domain-like	T: Mss4-like	F: NTP_transf_2, PAP_NTPase	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	SUPEROXIDE DISMUTASE	cation binding transition metal ion binding ion binding binding metal ion binding small molecule binding superoxide dismutase activity oxidoreductase activity, acting on superoxide radicals as acceptor oxidoreductase activity antioxidant activity catalytic activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR036324	Manganese/iron superoxide dismutase, N-terminal domain superfamily	Homologous Superfamily
A, B, C	IPR001189	Manganese/iron superoxide dismutase	Family
A, B, C	IPR019833	Manganese/iron superoxide dismutase, binding site	Binding Site
A, B, C	IPR019832	Manganese/iron superoxide dismutase, C-terminal	Domain
A, B, C	IPR019831	Manganese/iron superoxide dismutase, N-terminal	Domain
A, B, C	IPR036314	Manganese/iron superoxide dismutase, C-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.