1DP3 | pdb_00001dp3

SOLUTION STRUCTURE OF THE DNA BINDING DOMAIN OF THE TRAM PROTEIN

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1dp3a_	All alpha proteins	IHF-like DNA-binding proteins	IHF-like DNA-binding proteins	DNA-binding domain (fragment?) of the TraM protein	DNA-binding domain (fragment?) of the TraM protein	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	DNA-binding domain (fragment?) of the TraM protein	8020094	4003039	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	IHF-like DNA-binding proteins	8032474	3000426	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Tra_M_N	e1dp3A1	A: alpha arrays	X: HTH	H: DNA-binding domain of TraM protein (From Topology)	T: DNA-binding domain of TraM protein	F: Tra_M_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.10.450	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	TraM protein, DNA-binding	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	TRAM PROTEIN	DNA binding binding nucleic acid binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR010992	Integration host factor (IHF)-like DNA-binding domain superfamily	Homologous Superfamily
A	IPR042073	TraM, DNA-binding domain	Homologous Superfamily
A	IPR007925	Relaxosome protein TraM	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.