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NMR SOLUTION STRUCTURE OF THE CAPSID PROTEIN FROM ROUS SARCOMA VIRUS External Resource: Annotation Domain Annotation: SCOP2 Classification SCOP2 Database Homepage Chains Type Family Name Domain Identifier Family Identifier Provenance Source (Version) A SCOP2 Family Retrovirus capsid protein C-terminal domain 8024806 4000865 SCOP2 (2022-06-29) A SCOP2 Superfamily Retrovirus capsid dimerization domain-like 8037185 3001819 SCOP2 (2022-06-29)
Chains Family Name Domain Identifier Architecture Possible Homology Homology Topology Family Provenance Source (Version) A PF19317 e1d1dA1 A: alpha bundles X: Retrovirus capsid protein H: Retrovirus capsid protein-C (From Topology) T: Retrovirus capsid protein-C F: PF19317 ECOD (1.6) A PF00607 e1d1dA2 A: alpha bundles X: Retrovirus capsid protein H: Retrovirus capsid protein N-terminal domain (From Topology) T: Retrovirus capsid protein N-terminal domain F: PF00607 ECOD (1.6)
Chains Accession Name Description Comments Source PF00607 gag protein p24 N-terminal domain (Gag_p24) gag protein p24 N-terminal domain p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro. Domain
Chains Polymer Molecular Function Biological Process Cellular Component PROTEIN (CAPSID PROTEIN)
Chains Accession Name Type IPR004028 Retroviral Gag polyprotein, M Domain IPR036875 Zinc finger, CCHC-type superfamily Homologous Superfamily IPR001995 Peptidase A2A, retrovirus, catalytic Domain IPR034170 Retropepsin-like catalytic domain Domain IPR001878 Zinc finger, CCHC-type Domain IPR008919 Retrovirus capsid, N-terminal Homologous Superfamily IPR010999 Retroviral matrix protein Homologous Superfamily IPR012344 Matrix protein, lentiviral and alpha-retroviral, N-terminal Homologous Superfamily IPR021109 Aspartic peptidase domain superfamily Homologous Superfamily IPR001969 Aspartic peptidase, active site Active Site IPR018061 Retropepsins Domain IPR008916 Retrovirus capsid, C-terminal Homologous Superfamily