1CJD | pdb_00001cjd

THE BACTERIOPHAGE PRD1 COAT PROTEIN, P3, IS STRUCTURALLY SIMILAR TO HUMAN ADENOVIRUS HEXON

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d1cjdc2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	Coat protein p3, C-terminal domain	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
C	d1cjdc1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	Coat protein p3, N-terminal domain	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
B	d1cjdb2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	Coat protein p3, C-terminal domain	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
B	d1cjdb1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	Coat protein p3, N-terminal domain	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
A	d1cjda2	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	Coat protein p3, C-terminal domain	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)
A	d1cjda1	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP	Coat protein p3	Coat protein p3, N-terminal domain	(Enterobacteria phage PRD1 ) [TaxId: 10658 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Group II dsDNA viruses VP	8032458	3001214	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Group II dsDNA viruses VP	8032457	3001214	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Phage_Capsid_P3_2nd	e1cjdC2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
C	Phage_Capsid_P3_1st	e1cjdC1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
B	Phage_Capsid_P3_2nd	e1cjdB2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
B	Phage_Capsid_P3_1st	e1cjdB1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)
A	Phage_Capsid_P3_2nd	e1cjdA2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_2nd	ECOD (1.6)
A	Phage_Capsid_P3_1st	e1cjdA1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Phage_Capsid_P3_1st	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (4.3.0)
C	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
B	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (4.3.0)
B	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
A	2.70.9.30	Mainly Beta	Distorted Sandwich	Adenovirus Type 2 Hexon	domain 4	CATH (4.3.0)
A	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF25514	P3 major capsid protein C-terminal (P3_C)	P3 major capsid protein C-terminal	The P3 major capsid protein adopts a 'double-sandwich' structure comprising two eight-stranded viral beta-sandwich domains with jellyroll fold, each of which contains a 12-residue alpha-helix. This protein trimerises through a 'trimerisation loop' se ...	The P3 major capsid protein adopts a 'double-sandwich' structure comprising two eight-stranded viral beta-sandwich domains with jellyroll fold, each of which contains a 12-residue alpha-helix. This protein trimerises through a 'trimerisation loop' sequence, and is incorporated within the viral capsid [1]. This entry represents the C-terminal domain of the P3 protein.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	PROTEIN (MAJOR CAPSID PROTEIN (P3))	-	-	viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR015108	P3, N-terminal domain	Domain
A, B, C	IPR029053	Viral coat protein subunit	Homologous Superfamily
A, B, C	IPR057669	P3, C-terminal domain	Domain
A, B, C	IPR016112	Group II dsDNA virus coat/capsid protein	Homologous Superfamily
A, B, C	IPR016115	Bacteriophage PRD1, P3, N-terminal	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.