1BVP | pdb_00001bvp

THE CRYSTAL STRUCTURE OF BLUETONGUE VIRUS VP7

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F [auth 6]	d1bvp61	All alpha proteins	A virus capsid protein alpha-helical domain	A virus capsid protein alpha-helical domain	Orbivirus capsid	BTV vp7	(Bluetongue virus (serotype 10 / American isolate) ) [TaxId: 10900 ],	SCOPe (2.08)
F [auth 6]	d1bvp62	All beta proteins	Viral protein domain	Viral protein domain	Top domain of virus capsid protein	BTV vp7, central (top) domain	(Bluetongue virus (serotype 10 / American isolate) ) [TaxId: 10900 ],	SCOPe (2.08)
E [auth 5]	d1bvp51	All alpha proteins	A virus capsid protein alpha-helical domain	A virus capsid protein alpha-helical domain	Orbivirus capsid	BTV vp7	(Bluetongue virus (serotype 10 / American isolate) ) [TaxId: 10900 ],	SCOPe (2.08)
E [auth 5]	d1bvp52	All beta proteins	Viral protein domain	Viral protein domain	Top domain of virus capsid protein	BTV vp7, central (top) domain	(Bluetongue virus (serotype 10 / American isolate) ) [TaxId: 10900 ],	SCOPe (2.08)
D [auth 4]	d1bvp41	All alpha proteins	A virus capsid protein alpha-helical domain	A virus capsid protein alpha-helical domain	Orbivirus capsid	BTV vp7	(Bluetongue virus (serotype 10 / American isolate) ) [TaxId: 10900 ],	SCOPe (2.08)
D [auth 4]	d1bvp42	All beta proteins	Viral protein domain	Viral protein domain	Top domain of virus capsid protein	BTV vp7, central (top) domain	(Bluetongue virus (serotype 10 / American isolate) ) [TaxId: 10900 ],	SCOPe (2.08)
C [auth 3]	d1bvp31	All alpha proteins	A virus capsid protein alpha-helical domain	A virus capsid protein alpha-helical domain	Orbivirus capsid	BTV vp7	(Bluetongue virus (serotype 10 / American isolate) ) [TaxId: 10900 ],	SCOPe (2.08)
C [auth 3]	d1bvp32	All beta proteins	Viral protein domain	Viral protein domain	Top domain of virus capsid protein	BTV vp7, central (top) domain	(Bluetongue virus (serotype 10 / American isolate) ) [TaxId: 10900 ],	SCOPe (2.08)
B [auth 2]	d1bvp21	All alpha proteins	A virus capsid protein alpha-helical domain	A virus capsid protein alpha-helical domain	Orbivirus capsid	BTV vp7	(Bluetongue virus (serotype 10 / American isolate) ) [TaxId: 10900 ],	SCOPe (2.08)
B [auth 2]	d1bvp22	All beta proteins	Viral protein domain	Viral protein domain	Top domain of virus capsid protein	BTV vp7, central (top) domain	(Bluetongue virus (serotype 10 / American isolate) ) [TaxId: 10900 ],	SCOPe (2.08)
A [auth 1]	d1bvp11	All alpha proteins	A virus capsid protein alpha-helical domain	A virus capsid protein alpha-helical domain	Orbivirus capsid	BTV vp7	(Bluetongue virus (serotype 10 / American isolate) ) [TaxId: 10900 ],	SCOPe (2.08)
A [auth 1]	d1bvp12	All beta proteins	Viral protein domain	Viral protein domain	Top domain of virus capsid protein	BTV vp7, central (top) domain	(Bluetongue virus (serotype 10 / American isolate) ) [TaxId: 10900 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F [auth 6]	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8038511	3001154	SCOP2B (2022-06-29)
F [auth 6]	SCOP2B Superfamily	Top domain of rotavirus capsid protein-like	8041156	3002477	SCOP2B (2022-06-29)
F [auth 6]	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8038511	3001154	SCOP2B (2022-06-29)
E [auth 5]	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8038511	3001154	SCOP2B (2022-06-29)
E [auth 5]	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8038511	3001154	SCOP2B (2022-06-29)
E [auth 5]	SCOP2B Superfamily	Top domain of rotavirus capsid protein-like	8041156	3002477	SCOP2B (2022-06-29)
D [auth 4]	SCOP2B Superfamily	Top domain of rotavirus capsid protein-like	8041156	3002477	SCOP2B (2022-06-29)
D [auth 4]	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8038511	3001154	SCOP2B (2022-06-29)
D [auth 4]	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8038511	3001154	SCOP2B (2022-06-29)
C [auth 3]	SCOP2B Superfamily	Top domain of rotavirus capsid protein-like	8041156	3002477	SCOP2B (2022-06-29)
C [auth 3]	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8038511	3001154	SCOP2B (2022-06-29)
C [auth 3]	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8038511	3001154	SCOP2B (2022-06-29)
B [auth 2]	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8038511	3001154	SCOP2B (2022-06-29)
B [auth 2]	SCOP2B Superfamily	A virus capsid protein alpha-helical domain	8038511	3001154	SCOP2B (2022-06-29)
B [auth 2]	SCOP2B Superfamily	Top domain of rotavirus capsid protein-like	8041156	3002477	SCOP2B (2022-06-29)
A [auth 1]	SCOP2 Family	Orbivirus capsid	8026132	4001248	SCOP2 (2022-06-29)
A [auth 1]	SCOP2 Family	Top domain of rotavirus capsid protein-like	8028777	4002501	SCOP2 (2022-06-29)
A [auth 1]	SCOP2 Superfamily	A virus capsid protein alpha-helical domain	8038511	3001154	SCOP2 (2022-06-29)
A [auth 1]	SCOP2 Superfamily	Top domain of rotavirus capsid protein-like	8041156	3002477	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth 6]	Orbi_VP7_2nd	e1bvp61	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Orbi_VP7_2nd	ECOD (1.6)
F [auth 6]	Orbi_VP7_1st	e1bvp62	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Orbi_VP7_1st	ECOD (1.6)
E [auth 5]	Orbi_VP7_2nd	e1bvp51	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Orbi_VP7_2nd	ECOD (1.6)
E [auth 5]	Orbi_VP7_1st	e1bvp52	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Orbi_VP7_1st	ECOD (1.6)
D [auth 4]	Orbi_VP7_2nd	e1bvp41	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Orbi_VP7_2nd	ECOD (1.6)
D [auth 4]	Orbi_VP7_1st	e1bvp42	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Orbi_VP7_1st	ECOD (1.6)
C [auth 3]	Orbi_VP7_2nd	e1bvp31	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Orbi_VP7_2nd	ECOD (1.6)
C [auth 3]	Orbi_VP7_1st	e1bvp32	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Orbi_VP7_1st	ECOD (1.6)
B [auth 2]	Orbi_VP7_2nd	e1bvp21	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Orbi_VP7_2nd	ECOD (1.6)
B [auth 2]	Orbi_VP7_1st	e1bvp22	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Orbi_VP7_1st	ECOD (1.6)
A [auth 1]	Orbi_VP7_2nd	e1bvp11	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Orbi_VP7_2nd	ECOD (1.6)
A [auth 1]	Orbi_VP7_1st	e1bvp12	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Orbi_VP7_1st	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F [auth 6]	1.10.250.10	Mainly Alpha	Orthogonal Bundle	Bluetongue Virus 10, subunit 1	domain 1	CATH (4.3.0)
F [auth 6]	2.60.120.170	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
F [auth 6]	1.10.170.10	Mainly Alpha	Orthogonal Bundle	Bluetongue Virus 10, subunit 1	domain 3	CATH (4.3.0)
E [auth 5]	1.10.250.10	Mainly Alpha	Orthogonal Bundle	Bluetongue Virus 10, subunit 1	domain 1	CATH (4.3.0)
E [auth 5]	2.60.120.170	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
E [auth 5]	1.10.170.10	Mainly Alpha	Orthogonal Bundle	Bluetongue Virus 10, subunit 1	domain 3	CATH (4.3.0)
D [auth 4]	1.10.250.10	Mainly Alpha	Orthogonal Bundle	Bluetongue Virus 10, subunit 1	domain 1	CATH (4.3.0)
D [auth 4]	2.60.120.170	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
D [auth 4]	1.10.170.10	Mainly Alpha	Orthogonal Bundle	Bluetongue Virus 10, subunit 1	domain 3	CATH (4.3.0)
C [auth 3]	1.10.250.10	Mainly Alpha	Orthogonal Bundle	Bluetongue Virus 10, subunit 1	domain 1	CATH (4.3.0)
C [auth 3]	2.60.120.170	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
C [auth 3]	1.10.170.10	Mainly Alpha	Orthogonal Bundle	Bluetongue Virus 10, subunit 1	domain 3	CATH (4.3.0)
B [auth 2]	1.10.250.10	Mainly Alpha	Orthogonal Bundle	Bluetongue Virus 10, subunit 1	domain 1	CATH (4.3.0)
B [auth 2]	2.60.120.170	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
B [auth 2]	1.10.170.10	Mainly Alpha	Orthogonal Bundle	Bluetongue Virus 10, subunit 1	domain 3	CATH (4.3.0)
A [auth 1]	1.10.250.10	Mainly Alpha	Orthogonal Bundle	Bluetongue Virus 10, subunit 1	domain 1	CATH (4.3.0)
A [auth 1]	2.60.120.170	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
A [auth 1]	1.10.170.10	Mainly Alpha	Orthogonal Bundle	Bluetongue Virus 10, subunit 1	domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], F [auth 6]	PF00897	Orbivirus inner capsid protein VP7 (Orbi_VP7)	Orbivirus inner capsid protein VP7	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], F [auth 6]	BLUETONGUE VIRUS COAT PROTEIN VP7	structural molecule activity host cell surface binding binding host cell surface receptor binding	membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane viral process cellular process cellular component organization or biogenesis membrane fusion involved in viral entry into host cell	virion component viral membrane viral envelope viral capsid icosahedral viral capsid viral outer capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], F [auth 6]	IPR008935	Virus capsid protein, alpha-helical	Homologous Superfamily
A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], F [auth 6]	IPR008980	Viral capsid/haemagglutinin protein	Homologous Superfamily
A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], F [auth 6]	IPR023178	Orbivirus inner capsid protein VP7, C-terminal	Homologous Superfamily
A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], F [auth 6]	IPR023176	Orbivirus inner capsid protein VP7, N-terminal	Homologous Superfamily
A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], F [auth 6]	IPR001803	Orbivirus inner capsid protein VP7	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.