1B33 | pdb_00001b33

STRUCTURE OF LIGHT HARVESTING COMPLEX OF ALLOPHYCOCYANIN ALPHA AND BETA CHAINS/CORE-LINKER COMPLEX AP*LC7.8

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d1b33l_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Allophycocyanin alpha subunit	(Mastigocladus laminosus ) [TaxId: 83541 ],	SCOPe (2.08)
J	d1b33j_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Allophycocyanin alpha subunit	(Mastigocladus laminosus ) [TaxId: 83541 ],	SCOPe (2.08)
H	d1b33h_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Allophycocyanin alpha subunit	(Mastigocladus laminosus ) [TaxId: 83541 ],	SCOPe (2.08)
E	d1b33e_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Allophycocyanin alpha subunit	(Mastigocladus laminosus ) [TaxId: 83541 ],	SCOPe (2.08)
C	d1b33c_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Allophycocyanin alpha subunit	(Mastigocladus laminosus ) [TaxId: 83541 ],	SCOPe (2.08)
A	d1b33a_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Allophycocyanin alpha subunit	(Mastigocladus laminosus ) [TaxId: 83541 ],	SCOPe (2.08)
N [auth O]	d1b33o_	Alpha and beta proteins (a+b)	Allophycocyanin linker chain (domain)	Allophycocyanin linker chain (domain)	Allophycocyanin linker chain (domain)	Allophycocyanin linker chain (domain)	(Mastigocladus laminosus ) [TaxId: 83541 ],	SCOPe (2.08)
G [auth N]	d1b33n_	Alpha and beta proteins (a+b)	Allophycocyanin linker chain (domain)	Allophycocyanin linker chain (domain)	Allophycocyanin linker chain (domain)	Allophycocyanin linker chain (domain)	(Mastigocladus laminosus ) [TaxId: 83541 ],	SCOPe (2.08)
M	d1b33m_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Allophycocyanin beta subunit	(Mastigocladus laminosus ) [TaxId: 83541 ],	SCOPe (2.08)
K	d1b33k_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Allophycocyanin beta subunit	(Mastigocladus laminosus ) [TaxId: 83541 ],	SCOPe (2.08)
I	d1b33i_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Allophycocyanin beta subunit	(Mastigocladus laminosus ) [TaxId: 83541 ],	SCOPe (2.08)
F	d1b33f_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Allophycocyanin beta subunit	(Mastigocladus laminosus ) [TaxId: 83541 ],	SCOPe (2.08)
D	d1b33d_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Allophycocyanin beta subunit	(Mastigocladus laminosus ) [TaxId: 83541 ],	SCOPe (2.08)
B	d1b33b_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Allophycocyanin beta subunit	(Mastigocladus laminosus ) [TaxId: 83541 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Globin-like	8036263	3000554	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Globin-like	8036263	3000554	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Globin-like	8036263	3000554	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Globin-like	8036263	3000554	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Globin-like	8036263	3000554	SCOP2B (2022-06-29)
A	SCOP2 Family	Phycocyanin-like phycobilisome proteins	8023883	4000579	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Globin-like	8036263	3000554	SCOP2 (2022-06-29)
N [auth O]	SCOP2B Superfamily	Allophycocyanin linker chain (domain)	8034898	3000710	SCOP2B (2022-06-29)
G [auth N]	SCOP2 Family	Allophycocyanin linker chain (domain)	8022518	4001088	SCOP2 (2022-06-29)
G [auth N]	SCOP2 Superfamily	Allophycocyanin linker chain (domain)	8034898	3000710	SCOP2 (2022-06-29)
M	SCOP2B Superfamily	Globin-like	8036264	3000554	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Globin-like	8036264	3000554	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Globin-like	8036264	3000554	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Globin-like	8036264	3000554	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Globin-like	8036264	3000554	SCOP2B (2022-06-29)
B	SCOP2 Family	Phycocyanin-like phycobilisome proteins	8023884	4000579	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Globin-like	8036264	3000554	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L		e1b33L1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F:	ECOD (v294.1)
J		e1b33J1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F:	ECOD (v294.1)
H		e1b33H1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F:	ECOD (v294.1)
E		e1b33E1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F:	ECOD (v294.1)
C		e1b33C1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F:	ECOD (v294.1)
A		e1b33A1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F:	ECOD (v294.1)
N [auth O]	Nup35_RRM	e1b33O1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Nup35_RRM	ECOD (v294.1)
G [auth N]	CpcD	e1b33N1	A: a+b two layers	X: Allophycocyanin linker chain (domain)	H: Allophycocyanin linker chain (domain)	T: Allophycocyanin linker chain (domain)	F: CpcD	ECOD (v294.1)
M		e1b33M1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F:	ECOD (v294.1)
K		e1b33K1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F:	ECOD (v294.1)
I		e1b33I1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F:	ECOD (v294.1)
F		e1b33F1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F:	ECOD (v294.1)
D		e1b33D1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F:	ECOD (v294.1)
B		e1b33B1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	T: alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	F:	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
J	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
H	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
E	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
C	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
A	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
N [auth O]	3.30.1490.170	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
G [auth N]	3.30.1490.170	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
M	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
K	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
I	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
F	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
D	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)
B	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E, H, J A, C, E, H, J, L	ALLOPHYCOCYANIN, ALPHA CHAIN	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
G [auth N], N [auth O]	PHYCOBILISOME 7.8 KD LINKER POLYPEPTIDE	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
B, D, F, I, K B, D, F, I, K, M	ALLOPHYCOCYANIN, BETA CHAIN	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E, H, J A, C, E, H, J, L	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
A, C, E, H, J A, C, E, H, J, L	IPR009050	Globin-like superfamily	Homologous Superfamily
A, C, E, H, J A, C, E, H, J, L	IPR012128	Phycobilisome, alpha/beta subunit	Family
G [auth N], N [auth O]	IPR011064	Allophycocyanin linker chain	Homologous Superfamily
G [auth N], N [auth O]	IPR011134	Allophycocyanin linker protein	Family
G [auth N], N [auth O]	IPR008213	CpcD-like domain	Domain
B, D, F, I, K B, D, F, I, K, M	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
B, D, F, I, K B, D, F, I, K, M	IPR006245	Allophycocyanin, beta subunit	Family
B, D, F, I, K B, D, F, I, K, M	IPR009050	Globin-like superfamily	Homologous Superfamily
B, D, F, I, K B, D, F, I, K, M	IPR012128	Phycobilisome, alpha/beta subunit	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B, D, F, I, K B, D, F, I, K, M	MEN	Parent Component: ASN RESID: AA0070 PSI-MOD : N4-methyl-L-asparagine MOD:00079

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.