11YO | pdb_000011yo

Single-conformation model re-refinement of 2F/S3-rich PSII intermediate structure at 2.09 Angstrom resolution

External Resource: Annotation


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
U [auth a]		Photosystem II protein D1 1
B,
V [auth b]		Photosystem II CP47 reaction center protein
C,
W [auth c]		Photosystem II CP43 reaction center protein
D,
X [auth d]		Photosystem II D2 protein
E,
Y [auth e]		Cytochrome b559 subunit alpha
F,
Z [auth f]		Cytochrome b559 subunit beta
AA [auth h],
G [auth H]		Photosystem II reaction center protein H
BA [auth i],
H [auth I]		Photosystem II reaction center protein I-
CA [auth j],
I [auth J]		Photosystem II reaction center protein J-
DA [auth k],
J [auth K]		Photosystem II reaction center protein K-
EA [auth l],
K [auth L]		Photosystem II reaction center protein L-
FA [auth m],
L [auth M]		Photosystem II reaction center protein M-
GA [auth o],
M [auth O]		Photosystem II manganese-stabilizing polypeptide
HA [auth r],
N [auth R]		Photosystem II protein Y
IA [auth t],
O [auth T]		Photosystem II reaction center protein T-
JA [auth u],
P [auth U]		Photosystem II 12 kDa extrinsic protein-
KA [auth v],
Q [auth V]		Cytochrome c-550
LA [auth x],
R [auth X]		Photosystem II reaction center X protein-
MA [auth y],
S [auth Y]		Photosystem II reaction center protein Ycf12-
NA [auth z],
T [auth Z]		Photosystem II reaction center protein Z-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
U [auth a]		IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A,
U [auth a]		IPR005867Photosystem II protein D1Family
A,
U [auth a]		IPR000484Photosynthetic reaction centre, L/MFamily
A,
U [auth a]		IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
A,
U [auth a]		IPR055266Photosystem II protein D1/D2Family
B,
V [auth b]		IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
B,
V [auth b]		IPR000932Photosystem antenna protein-likeFamily
B,
V [auth b]		IPR017486Photosystem II CP47 reaction centre proteinFamily
C,
W [auth c]		IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
C,
W [auth c]		IPR000932Photosystem antenna protein-likeFamily
C,
W [auth c]		IPR005869Photosystem II CP43 reaction centre proteinFamily
C,
W [auth c]		IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
D,
X [auth d]		IPR005868Photosystem II D2Family
D,
X [auth d]		IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
D,
X [auth d]		IPR000484Photosynthetic reaction centre, L/MFamily
D,
X [auth d]		IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
D,
X [auth d]		IPR055266Photosystem II protein D1/D2Family
E,
Y [auth e]		IPR013081Photosystem II cytochrome b559, N-terminalDomain
E,
Y [auth e]		IPR006217Photosystem II cytochrome b559, alpha subunitFamily
E,
Y [auth e]		IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
E,
Y [auth e]		IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
E,
Y [auth e]		IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
F,
Z [auth f]		IPR006241Photosystem II cytochrome b559, beta subunitFamily
F,
Z [auth f]		IPR013081Photosystem II cytochrome b559, N-terminalDomain
F,
Z [auth f]		IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
AA [auth h],
G [auth H]		IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
AA [auth h],
G [auth H]		IPR001056Photosystem II reaction centre protein HFamily
BA [auth i],
H [auth I]		IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
BA [auth i],
H [auth I]		IPR003686Photosystem II PsbIFamily
CA [auth j],
I [auth J]		IPR002682Photosystem II PsbJFamily
CA [auth j],
I [auth J]		IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily
DA [auth k],
J [auth K]		IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
DA [auth k],
J [auth K]		IPR003687Photosystem II PsbKFamily
EA [auth l],
K [auth L]		IPR003372Photosystem II PsbLFamily
EA [auth l],
K [auth L]		IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
FA [auth m],
L [auth M]		IPR007826Photosystem II PsbMFamily
FA [auth m],
L [auth M]		IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
GA [auth o],
M [auth O]		IPR011250Outer membrane protein/outer membrane enzyme PagP, beta-barrelHomologous Superfamily
GA [auth o],
M [auth O]		IPR002628Photosystem II extrinsic protein OFamily
HA [auth r],
N [auth R]		IPR009388Photosystem II PsbYFamily
IA [auth t],
O [auth T]		IPR001743Photosystem II PsbTFamily
IA [auth t],
O [auth T]		IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
JA [auth u],
P [auth U]		IPR010527Photosystem II PsbU, oxygen evolving complexFamily
KA [auth v],
Q [auth V]		IPR017851Photosystem II extrinsic protein V, cytochrome c-550 precursorFamily
KA [auth v],
Q [auth V]		IPR016003Photosystem II extrinsic protein V, cytochrome c-550 precursor-likeFamily
KA [auth v],
Q [auth V]		IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
KA [auth v],
Q [auth V]		IPR009056Cytochrome c-like domainDomain
KA [auth v],
Q [auth V]		IPR029490Cytochrome c-550 domainDomain
LA [auth x],
R [auth X]		IPR009518Photosystem II PsbXFamily
LA [auth x],
R [auth X]		IPR023431Photosystem II PsbX, type 1 subfamilyFamily
MA [auth y],
S [auth Y]		IPR010284Photosystem II reaction center protein Ycf12Family
NA [auth z],
T [auth Z]		IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
NA [auth z],
T [auth Z]		IPR002644Photosystem II PsbZ, reaction centreFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
BA [auth i],
H [auth I]		FME Parent Component: MET

RESID:  AA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891
FA [auth m],
L [auth M]		FME Parent Component: MET

RESID:  AA0021 , AA0566 , AA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891
IA [auth t],
O [auth T]		FME Parent Component: MET

RESID:  AA0021 , AA0566 , AA0021 , AA0566 , AA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891