11XU | pdb_000011xu

In situ subtomogram average of the transition zone linker in human airway cilia (composite map)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F [auth F1]	SCOP2B Superfamily	DLC-like	8034979	3000821	SCOP2B (2022-06-29)
E [auth E1]	SCOP2B Superfamily	DLC-like	8034979	3000821	SCOP2B (2022-06-29)
D [auth D1]	SCOP2B Superfamily	Skp1 dimerisation domain-like	8038683	3000564	SCOP2B (2022-06-29)
D [auth D1]	SCOP2B Superfamily	POZ domain	8035033	3000894	SCOP2B (2022-06-29)
C [auth C1]	SCOP2B Superfamily	Skp1 dimerisation domain-like	8038683	3000564	SCOP2B (2022-06-29)
C [auth C1]	SCOP2B Superfamily	POZ domain	8035033	3000894	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E [auth E1], F [auth F1]	PF01221	Dynein light chain type 1 (Dynein_light)	Dynein light chain type 1		Domain
C [auth C1], D [auth D1]	PF03931	Skp1 family, tetramerisation domain (Skp1_POZ)	Skp1 family, tetramerisation domain		Domain
C [auth C1], D [auth D1]	PF01466	Skp1 family, dimerisation domain (Skp1)	Skp1 family, dimerisation domain		Domain
A [auth A1], B [auth B1]	PF14252	Domain of unknown function (DUF4347) (DUF4347)	Domain of unknown function (DUF4347)	This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.	Domain
A [auth A1], B [auth B1]	PF12937	F-box-like (F-box-like)	F-box-like	This is an F-box-like family.	Domain
A [auth A1], B [auth B1]	PF00621	RhoGEF domain (RhoGEF)	RhoGEF domain	Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that Pfam:PF00169 domains invariably occur C-terminal to RhoGEF/DH domains.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G [auth G1], H [auth H1], I [auth I1], J [auth J1]	Double zinc ribbon and ankyrin repeat-containing protein 1	-	multicellular organismal process cellular developmental process sensory organ development photoreceptor cell differentiation visual system development cell development eye morphogenesis multicellular organism development neurogenesis neuron differentiation cell differentiation eye photoreceptor cell differentiation anatomical structure development animal organ morphogenesis multicellular organismal process cellular developmental process sensory organ development photoreceptor cell differentiation visual system development cell development eye morphogenesis multicellular organism development neurogenesis neuron differentiation cell differentiation eye photoreceptor cell differentiation anatomical structure development animal organ morphogenesis sensory system development system development photoreceptor cell development developmental process eye photoreceptor cell development eye development animal organ development nervous system development generation of neurons anatomical structure morphogenesis sensory organ morphogenesis neuron development cellular process animal gross anatomical part developmental process	intracellular organelle centrosome microtubule organizing center cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton
E [auth E1], F [auth F1]	Dynein light chain 1, cytoplasmic	protein binding binding protein domain specific binding nitric-oxide synthase inhibitor activity enzyme regulator activity molecular function inhibitor activity molecular function regulator activity enzyme inhibitor activity nitric-oxide synthase regulator activity scaffold protein binding protein-containing complex binding dynein intermediate chain binding enzyme binding identical protein binding	organelle assembly plasma membrane bounded cell projection organization motile cilium assembly cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization organelle organization cellular component assembly cilium assembly cellular process cellular component organization or biogenesis cilium organization cell projection assembly organelle assembly plasma membrane bounded cell projection organization motile cilium assembly cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization organelle organization cellular component assembly cilium assembly cellular process cellular component organization or biogenesis cilium organization cell projection assembly cellular response to stimulus positive regulation of cell communication regulation of cellular process regulation of cell cycle phase transition positive regulation of signal transduction response to stimulus positive regulation of cell cycle checkpoint negative regulation of biological process spindle checkpoint signaling negative regulation of cell cycle regulation of signal transduction regulation of mitotic nuclear division intracellular signal transduction negative regulation of mitotic cell cycle cell communication regulation of cell cycle checkpoint negative regulation of mitotic sister chromatid segregation negative regulation of chromosome organization negative regulation of cell cycle phase transition mitotic spindle checkpoint signaling signal transduction cell cycle mitotic sister chromatid separation chromosome segregation negative regulation of sister chromatid segregation mitotic spindle assembly checkpoint signaling regulation of biological process negative regulation of cellular component organization regulation of cell cycle process regulation of spindle checkpoint sister chromatid segregation positive regulation of intracellular signal transduction regulation of chromosome organization regulation of organelle organization regulation of mitotic cell cycle phase transition regulation of mitotic sister chromatid segregation mitotic cell cycle process regulation of response to stimulus positive regulation of mitotic cell cycle spindle assembly checkpoint regulation of chromosome separation negative regulation of mitotic nuclear division regulation of chromosome segregation regulation of cellular component organization regulation of mitotic sister chromatid separation regulation of metaphase/anaphase transition of cell cycle regulation of mitotic spindle checkpoint signaling regulation of mitotic cell cycle spindle assembly checkpoint spindle assembly checkpoint signaling positive regulation of biological process cell cycle phase transition regulation of mitotic metaphase/anaphase transition mitotic cell cycle positive regulation of response to stimulus regulation of mitotic cell cycle regulation of intracellular signal transduction negative regulation of cellular process mitotic sister chromatid segregation positive regulation of cell cycle process negative regulation of mitotic metaphase/anaphase transition regulation of cell cycle negative regulation of chromosome separation positive regulation of cellular process cell cycle process positive regulation of spindle checkpoint mitotic nuclear division regulation of signaling negative regulation of mitotic cell cycle phase transition organelle fission biological regulation chromosome organization negative regulation of cell cycle process positive regulation of cell cycle cell cycle checkpoint signaling mitotic cell cycle checkpoint signaling nuclear division negative regulation of chromosome segregation negative regulation of nuclear division negative regulation of organelle organization chromosome separation regulation of sister chromatid segregation negative regulation of mitotic sister chromatid separation regulation of nuclear division negative regulation of metaphase/anaphase transition of cell cycle nuclear chromosome segregation metaphase/anaphase transition of mitotic cell cycle regulation of cell communication metaphase/anaphase transition of cell cycle mitotic cell cycle phase transition positive regulation of signaling DNA-templated DNA replication maintenance of fidelity regulation of primary metabolic process nucleobase-containing compound metabolic process negative regulation of DNA-templated DNA replication regulation of DNA strand resection involved in replication fork processing DNA strand resection involved in replication fork processing negative regulation of nucleobase-containing compound metabolic process negative regulation of DNA strand resection involved in replication fork processing regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process DNA-templated DNA replication negative regulation of DNA replication negative regulation of metabolic process primary metabolic process DNA metabolic process regulation of macromolecule metabolic process nucleic acid metabolic process DNA replication regulation of DNA-templated DNA replication metabolic process negative regulation of DNA metabolic process macromolecule metabolic process regulation of metabolic process replication fork processing regulation of DNA metabolic process regulation of DNA replication cellular localization transport intracellular transport intraciliary retrograde transport establishment of localization localization establishment of localization in cell microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement microtubule-based process intraciliary transport phosphorylation negative regulation of phosphate metabolic process phosphate-containing compound metabolic process regulation of phosphorylation negative regulation of phosphorylation developmental process spermatid development spermatid differentiation sexual reproduction cellular developmental process spermatogenesis reproductive process multicellular organismal reproductive process cell development cellular process involved in reproduction in multicellular organism developmental process involved in reproduction gamete generation male gamete generation cell differentiation anatomical structure development germ cell development regulation of localization establishment of protein localization nitrogen compound transport positive regulation of establishment of protein localization carbohydrate homeostasis positive regulation of insulin secretion involved in cellular response to glucose stimulus positive regulation of insulin secretion intracellular protein localization regulation of biological quality regulation of peptide hormone secretion regulation of hormone levels positive regulation of peptide hormone secretion establishment of protein localization to extracellular region intracellular glucose homeostasis protein secretion cellular response to oxygen-containing compound regulation of protein secretion regulation of secretion cellular response to carbohydrate stimulus chemical homeostasis response to glucose response to chemical glucose homeostasis positive regulation of protein localization insulin secretion involved in cellular response to glucose stimulus regulation of hormone secretion regulation of protein localization regulation of peptide secretion homeostatic process positive regulation of secretion by cell hormone secretion protein localization to extracellular region positive regulation of protein transport peptide secretion regulation of secretion by cell secretion by cell positive regulation of hormone secretion response to monosaccharide response to carbohydrate positive regulation of secretion signal release cellular response to hexose stimulus intracellular chemical homeostasis cellular response to monosaccharide stimulus positive regulation of peptide secretion regulation of transport secretion regulation of peptide transport regulation of establishment of protein localization export from cell cell-cell signaling response to oxygen-containing compound cellular response to glucose stimulus regulation of protein transport positive regulation of protein secretion peptide transport response to hexose cellular response to chemical stimulus cellular homeostasis positive regulation of transport regulation of cellular localization protein transport regulation of insulin secretion peptide hormone secretion macromolecule localization regulation of insulin secretion involved in cellular response to glucose stimulus hormone transport insulin secretion positive regulation of intracellular transport regulation of intracellular transport multicellular organismal process head development animal organ development brain development nervous system development substantia nigra development multicellular organism development central nervous system development midbrain development animal gross anatomical part developmental process neural nucleus development system development	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cell projection cilium plasma membrane bounded cell projection tertiary granule membrane membrane intracellular vesicle membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cell projection cilium plasma membrane bounded cell projection tertiary granule membrane membrane intracellular vesicle endomembrane system tertiary granule cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cytoplasmic vesicle secretory granule secretory vesicle vesicle organelle membrane secretory granule membrane centrosome microtubule organizing center cytoskeleton membraneless organelle intracellular membraneless organelle microtubule cytoskeleton cytosol ciliary tip cell periphery plasma membrane mitotic spindle spindle nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen chromosome chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome ficolin-1-rich granule membrane ficolin-1-rich granule male germ cell nucleus germ cell nucleus site of double-strand break site of DNA damage protein-containing complex cytoplasmic dynein complex catalytic complex dynein complex microtubule associated complex neuron projection cytoplasm axon axon cytoplasm neuron projection
C [auth C1], D [auth D1]	S-phase kinase-associated protein 1	protein complex scaffold activity ubiquitin ligase complex scaffold activity structural molecule activity ubiquitin-like ligase-substrate adaptor activity enzyme-substrate adaptor activity protein-macromolecule adaptor activity molecular adaptor activity protein binding binding protein domain specific binding enzyme regulator activity ubiquitin ligase activator activity enzyme activator activity ubiquitin-protein transferase regulator activity protein complex scaffold activity ubiquitin ligase complex scaffold activity structural molecule activity ubiquitin-like ligase-substrate adaptor activity enzyme-substrate adaptor activity protein-macromolecule adaptor activity molecular adaptor activity protein binding binding protein domain specific binding enzyme regulator activity ubiquitin ligase activator activity enzyme activator activity ubiquitin-protein transferase regulator activity molecular function activator activity molecular function regulator activity ubiquitin-protein transferase activator activity cullin family protein binding beta-catenin binding F-box domain binding	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis developmental process neural crest cell differentiation cellular developmental process animal organ development intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis developmental process neural crest cell differentiation cellular developmental process animal organ development mesenchyme development tissue development stem cell differentiation cell differentiation anatomical structure development cellular process mesenchymal cell differentiation animal gross anatomical part developmental process microtubule organizing center organization microtubule cytoskeleton organization cellular component organization centrosome duplication organelle organization centrosome cycle microtubule-based process cell cycle cellular component organization or biogenesis cytoskeleton organization cell cycle process regulation of biological process regulation of cellular process regulation of cellular component organization regulation of centrosome cycle regulation of cell cycle process biological regulation regulation of microtubule-based process regulation of centrosome duplication regulation of cell cycle regulation of apoptotic process apoptotic process regulation of programmed cell death cell death programmed cell death primary metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal cellular response to stimulus DNA damage checkpoint signaling regulation of cell cycle phase transition response to stimulus signaling negative regulation of biological process regulation of cellular response to stress negative regulation of cell cycle cell cycle phase transition regulation of signal transduction intracellular signal transduction cell communication regulation of cell cycle checkpoint cellular response to stress regulation of intracellular signal transduction response to stress regulation of response to stress negative regulation of cellular process negative regulation of cell cycle phase transition signal transduction regulation of signaling DNA integrity checkpoint signaling negative regulation of cell cycle process cell cycle checkpoint signaling DNA damage response regulation of response to stimulus signal transduction in response to DNA damage regulation of cell communication regulation of DNA damage checkpoint cellular response to growth factor stimulus cell surface receptor protein serine/threonine kinase signaling pathway regulation of transmembrane receptor protein serine/threonine kinase signaling pathway cellular response to endogenous stimulus BMP signaling pathway enzyme-linked receptor protein signaling pathway cellular response to BMP stimulus regulation of BMP signaling pathway cell surface receptor signaling pathway response to endogenous stimulus regulation of cellular response to growth factor stimulus response to BMP response to growth factor transforming growth factor beta receptor superfamily signaling pathway protein polyubiquitination multicellular organism development multicellular organismal process limb development appendage development RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process catabolic process macroautophagy autophagy regulation of mitophagy regulation of catabolic process regulation of autophagy regulation of macroautophagy mitophagy regulation of autophagy of mitochondrion process utilizing autophagic mechanism autophagy of mitochondrion protein K48-linked ubiquitination mitotic cell cycle process G1/S transition of mitotic cell cycle cell cycle G1/S phase transition mitotic cell cycle mitotic cell cycle phase transition negative regulation of RNA biosynthetic process negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA-templated transcription negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process maintenance of protein location cellular localization maintenance of protein location in nucleus protein localization to nucleus maintenance of location maintenance of location in cell localization maintenance of protein location in cell macromolecule localization protein localization to organelle maintenance of protein localization in organelle intracellular protein localization regulation of mitotic cell cycle rhythmic process circadian rhythm regulation of circadian rhythm regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of response to external stimulus xenophagy response to biotic stimulus response to external biotic stimulus regulation of xenophagy response to other organism defense response response to external stimulus defense response to other organism developmental growth growth nervous system development cellular component biogenesis cell junction organization cellular component assembly neuromuscular junction development cell junction assembly synaptic assembly at neuromuscular junction synapse organization synapse assembly system development proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cilium assembly cilium organization cell projection assembly regulation of defense response regulation of inflammatory response inflammatory response chromatin organization chromatin remodeling heterochromatin formation epigenetic regulation of gene expression heterochromatin organization negative regulation of gene expression negative regulation of gene expression, epigenetic TOR signaling regulation of TOR signaling	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle organelle membraneless organelle intracellular membraneless organelle chromatin chromosome protein-containing complex ubiquitin ligase complex catalytic complex transferase complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle organelle membraneless organelle intracellular membraneless organelle chromatin chromosome protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex membrane-bounded organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle PcG protein complex centrosome microtubule organizing center cytoskeleton microtubule cytoskeleton PRC1 complex nuclear ubiquitin ligase complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen cullin-RING ubiquitin ligase complex SCF ubiquitin ligase complex Cul7-RING ubiquitin ligase complex
A [auth A1], B [auth B1]	Epithelial cell-transforming sequence 2 oncogene-like	GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
G [auth G1], H [auth H1], I [auth I1], J [auth J1]	IPR002110	Ankyrin repeat	Repeat
G [auth G1], H [auth H1], I [auth I1], J [auth J1]	IPR052481	Double zinc ribbon and ankyrin repeat-containing protein 1	Family
G [auth G1], H [auth H1], I [auth I1], J [auth J1]	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
G [auth G1], H [auth H1], I [auth I1], J [auth J1]	IPR025874	Double zinc ribbon	Domain
G [auth G1], H [auth H1], I [auth I1], J [auth J1]	IPR026876	Fn3 associated repeat	Repeat
E [auth E1], F [auth F1]	IPR037177	Dynein light chain superfamily	Homologous Superfamily
E [auth E1], F [auth F1]	IPR019763	Dynein light chain, type 1/2, conserved site	Conserved Site
E [auth E1], F [auth F1]	IPR001372	Dynein light chain, type 1/2	Family
C [auth C1], D [auth D1]	IPR001232	S-phase kinase-associated protein 1-like	Family
C [auth C1], D [auth D1]	IPR036296	SKP1-like, dimerisation domain superfamily	Homologous Superfamily
C [auth C1], D [auth D1]	IPR011333	SKP1/BTB/POZ domain superfamily	Homologous Superfamily
C [auth C1], D [auth D1]	IPR016897	S-phase kinase-associated protein 1	Family
C [auth C1], D [auth D1]	IPR016073	SKP1 component, POZ domain	Domain
C [auth C1], D [auth D1]	IPR016072	SKP1 component, dimerisation	Domain
A [auth A1], B [auth B1]	IPR000219	Dbl homology domain	Domain
A [auth A1], B [auth B1]	IPR036047	F-box-like domain superfamily	Homologous Superfamily
A [auth A1], B [auth B1]	IPR025592	Domain of unknown function DUF4347	Domain
A [auth A1], B [auth B1]	IPR035899	Dbl homology (DH) domain superfamily	Homologous Superfamily
A [auth A1], B [auth B1]	IPR011993	PH-like domain superfamily	Homologous Superfamily
A [auth A1], B [auth B1]	IPR052805	Epithelial cell-transforming sequence 2 oncogene-like and F-box only protein 16	Family
A [auth A1], B [auth B1]	IPR001810	F-box domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
G [auth G1], H [auth H1], I [auth I1], J [auth J1]	: Q9NVP4	adrenal cortex carcinoma malignant ependymoma sinusitis breast cancer osteosarcoma tuberculosis lung cancer psoriasis
E [auth E1], F [auth F1]	: P63167	brain ischemia acute myeloid leukemia breast cancer Emery-Dreifuss muscular dystrophy lung cancer ovarian cancer Becker muscular dystrophy Cerebral Ischemia hepatocellular carcinoma lymphoplasmacytic lymphoma plasma cell myeloma Duchenne muscular dystrophy juvenile dermatomyositis myopathy tuberculosis
C [auth C1], D [auth D1]	: P63208	allergic rhinitis esophageal adenocarcinoma hypothyroidism medulloblastoma pilocytic astrocytoma subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor glioblastoma large cell medulloblastoma ovarian cancer plasma cell myeloma systemic lupus erythematosus breast cancer Hashimoto thyroiditis malignant glioma allergic rhinitis esophageal adenocarcinoma hypothyroidism medulloblastoma pilocytic astrocytoma subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor glioblastoma large cell medulloblastoma ovarian cancer plasma cell myeloma systemic lupus erythematosus breast cancer Hashimoto thyroiditis malignant glioma pancreatic ductal adenocarcinoma rheumatoid arthritis
A [auth A1], B [auth B1]	: Q008S8	Precursor T-Cell Lymphoblastic Leukemia-Lymphoma psoriasis