6A70
Structure of the human PKD1/PKD2 complex
External Resource: Annotation
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Ion_trans | e6a70A1 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: Ion_trans | ECOD (1.6) |
A | PKD_channel | e6a70A2 | A: a+b two layers | X: Polycystin-mucolipin domain (From Topology) | H: Polycystin-mucolipin domain (From Topology) | T: Polycystin-mucolipin domain | F: PKD_channel | ECOD (1.6) |
D [auth G] | Ion_trans | e6a70G2 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: Ion_trans | ECOD (1.6) |
D [auth G] | PKD_channel | e6a70G1 | A: a+b two layers | X: Polycystin-mucolipin domain (From Topology) | H: Polycystin-mucolipin domain (From Topology) | T: Polycystin-mucolipin domain | F: PKD_channel | ECOD (1.6) |
C [auth F] | Ion_trans | e6a70F2 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: Ion_trans | ECOD (1.6) |
C [auth F] | PKD_channel | e6a70F1 | A: a+b two layers | X: Polycystin-mucolipin domain (From Topology) | H: Polycystin-mucolipin domain (From Topology) | T: Polycystin-mucolipin domain | F: PKD_channel | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth F], D [auth G] | PF08016 | Polycystin cation channel (PKD_channel) | Polycystin cation channel | - | Family |
A, C [auth F], D [auth G] | PF20519 | Polycystin domain (Polycystin_dom) | Polycystin domain | This domain represents the polycystin domain from group II of Transient receptor potential (TRP) channels (TRPP) including PKD1, PKD2, PKD2L and mucolipins. The polycystin domain display a sandwich-like shape with five beta-sheets in the tilted middl ... | Domain |
A, C [auth F], D [auth G] | PF00520 | Ion transport protein (Ion_trans) | Ion transport protein | - | Family |
PF08016 | Polycystin cation channel (PKD_channel) | Polycystin cation channel | - | Family | |
PF20519 | Polycystin domain (Polycystin_dom) | Polycystin domain | This domain represents the polycystin domain from group II of Transient receptor potential (TRP) channels (TRPP) including PKD1, PKD2, PKD2L and mucolipins. The polycystin domain display a sandwich-like shape with five beta-sheets in the tilted middl ... | Domain | |
PF01477 | PLAT/LH2 domain (PLAT) | PLAT/LH2 domain | This domain is found in a variety of membrane or lipid associated proteins. It is called the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain. The known structure of pancreatic lipase shows this domain bind ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Ion channel (VIC) superfamily | Polycystin cation channel |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Channels: Transient Receptor Potential (TRP) | PKD2 polycystic kidney disease channel in complex with PKD1 receptor |