2Z1B

Crystal Structure of 5-aminolevulinic acid dehydratase (ALAD) from Mus musculs

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Aldolase	8072519	3000445	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Aldolase	8072519	3000445	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Aldolase	8072519	3000445	SCOP2B (2022-06-29)
D	SCOP2 Family	5-aminolaevulinate dehydratase ALAD (porphobilinogen synthase)	8072518	4003237	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	Aldolase	8072519	3000445	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	ALAD	e2z1bA1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: ALAD	ECOD (1.6)
B	ALAD	e2z1bB1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: ALAD	ECOD (1.6)
C	ALAD	e2z1bC1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: ALAD	ECOD (1.6)
D	ALAD	e2z1bD1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: ALAD	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
B	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
C	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
D	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00490	Delta-aminolevulinic acid dehydratase (ALAD)	Delta-aminolevulinic acid dehydratase	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Delta-aminolevulinic acid dehydratase	protein-containing complex binding proteasome core complex binding binding hydro-lyase activity lyase activity catalytic activity porphobilinogen synthase activity carbon-oxygen lyase activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding protein-containing complex binding proteasome core complex binding binding hydro-lyase activity lyase activity catalytic activity porphobilinogen synthase activity carbon-oxygen lyase activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding identical protein binding protein binding	response to acid chemical response to organic substance response to stimulus response to chemical response to amino acid response to xenobiotic stimulus response to mercury ion response to metal ion response to inorganic substance response to selenium ion heme A biosynthetic process pigment metabolic process heme metabolic process porphyrin-containing compound biosynthetic process response to acid chemical response to organic substance response to stimulus response to chemical response to amino acid response to xenobiotic stimulus response to mercury ion response to metal ion response to inorganic substance response to selenium ion heme A biosynthetic process pigment metabolic process heme metabolic process porphyrin-containing compound biosynthetic process organonitrogen compound metabolic process tetrapyrrole metabolic process heme biosynthetic process organonitrogen compound biosynthetic process pigment biosynthetic process organic cyclic compound metabolic process organic substance metabolic process tetrapyrrole biosynthetic process biosynthetic process organic cyclic compound biosynthetic process heme a metabolic process organic substance biosynthetic process metabolic process porphyrin-containing compound metabolic process response to platinum ion response to methylmercury cellular response to stimulus response to cytokine response to interleukin-4 cellular response to chemical stimulus cellular response to cytokine stimulus cellular process cellular response to interleukin-4 cellular response to organic substance response to activity response to iron ion response to corticosteroid response to lipid response to hormone response to steroid hormone response to endogenous stimulus response to glucocorticoid response to organic cyclic compound response to alcohol response to oxygen-containing compound response to ethanol response to zinc ion response to ionizing radiation response to radiation response to abiotic stimulus response to nutrient levels response to vitamin B1 response to organonitrogen compound response to nutrient response to nitrogen compound response to vitamin catabolic process negative regulation of proteolysis negative regulation of proteolysis involved in protein catabolic process proteolysis involved in protein catabolic process negative regulation of biological process macromolecule catabolic process regulation of primary metabolic process negative regulation of protein catabolic process regulation of proteolysis involved in protein catabolic process regulation of proteolysis proteolysis protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process organonitrogen compound catabolic process negative regulation of catabolic process regulation of biological process regulation of protein metabolic process negative regulation of metabolic process biological regulation primary metabolic process proteasomal protein catabolic process regulation of macromolecule metabolic process protein catabolic process regulation of catabolic process negative regulation of proteasomal protein catabolic process regulation of proteasomal protein catabolic process macromolecule metabolic process regulation of metabolic process organic substance catabolic process regulation of protein catabolic process response to stress response to herbicide response to toxic substance response to decreased oxygen levels response to hypoxia response to oxygen levels heme O metabolic process heme O biosynthetic process protoporphyrinogen IX metabolic process protoporphyrinogen IX biosynthetic process response to fatty acid response to vitamin E heme B biosynthetic process heme B metabolic process response to cadmium ion response to oxidative stress cellular response to inorganic substance cellular response to metal ion response to lead ion cellular response to lead ion cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly protein homooligomerization cellular component organization or biogenesis response to cobalt ion response to aluminum ion response to arsenic-containing substance biological process involved in interspecies interaction between organisms response to other organism response to external stimulus response to lipopolysaccharide response to biotic stimulus response to bacterium response to external biotic stimulus response to molecule of bacterial origin	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol extracellular region extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR001731	Delta-aminolevulinic acid dehydratase	Family
A, B, C, D	IPR030656	Delta-aminolevulinic acid dehydratase, active site	Active Site
A, B, C, D	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.